Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,935,531 – 10,935,640 |
Length | 109 |
Max. P | 0.680969 |
Location | 10,935,531 – 10,935,640 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 73.05 |
Mean single sequence MFE | -19.61 |
Consensus MFE | -2.65 |
Energy contribution | -2.33 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.62 |
Mean z-score | -1.58 |
Structure conservation index | 0.14 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10935531 109 + 27905053 AAGCUUCAAACUUUUUAAUCGUUGUUUAGGUACAAUA----AACACUUUUUGUGCUGCUAAUCAACUACUUUUUUGUUACCCCAAUUGAAUAGCUCCUGGUUGUUUUCCAUAC .((((((((...........((((.((((((((((..----........))))))..)))).)))).......(((......)))))))..))))..(((.......)))... ( -15.70) >DroSec_CAF1 4979 94 + 1 AAGCUUCAAACUUUUUGAUGGAUGUUUAGGUAUAAUA----AACACUU---------------AGCUACUUUUUUGUUACCCCAAUUGAAUAGCUCCUGCUUGUAUCCCAUAC ((((.((((.....)))).(((((((((.......))----))))...---------------.((((.((..(((......)))..)).))))))).))))........... ( -14.60) >DroSim_CAF1 12434 94 + 1 AAGCUUCAAACUUUUUGAUGGAUGCUUAGGUAUAAUA----AACACUU---------------AGCUACUUUUUUGUUACCCCAAUUGAAUAGCUUCUGCUUGUAUCCCAUAC .....((((.....)))).((((((.(((((......----...))))---------------)((((.((..(((......)))..)).))))........))))))..... ( -14.30) >DroEre_CAF1 4997 102 + 1 AAGUUUCAAACUAUUUAAAGGAUGUGUAGGUACAACA----ACCAUCU----UG-UGGUAAGUAGCUACAUU--GCUUUCCCCAAUUGAAUAGCUCCUGGUUGUAACCUACAC .......................((((((((...(((----((((...----((-((((.....))))))..--((((((.......))).)))...))))))).)))))))) ( -26.80) >DroYak_CAF1 12745 107 + 1 UAGUUUCAAACUAUCCAAAGGAUGUGUAGGUGCAGCAAAUAACUUUUU----UG-UGCCAUUUAGUUACUUUC-UCUUUCCCCAAUUGAAUAGCUCCUGGCUGCAUCCUACAC ............((((...))))(((((((((((((.....((.....----.)-)((.((((((((......-.........)))))))).)).....)))))).))))))) ( -26.66) >consensus AAGCUUCAAACUUUUUAAUGGAUGUUUAGGUACAAUA____AACACUU____UG_UG__A___AGCUACUUUUUUGUUACCCCAAUUGAAUAGCUCCUGGUUGUAUCCCAUAC ............................((((((((...............................................................))))))))...... ( -2.65 = -2.33 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:48 2006