| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,927,769 – 10,927,859 |
| Length | 90 |
| Max. P | 0.772490 |
| Location | 10,927,769 – 10,927,859 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 76.36 |
| Mean single sequence MFE | -21.32 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.40 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10927769 90 - 27905053 UAUGGCUGGGAGCGUGCCAUAGACUCCAAGGGUCGUUCCUAUUACAUAAAGUGAGUAUCCCAGCAUAAUAUC------GUCUUAUAUGGCC-UUAUA ....(((((((((........((((.....)))).......((((.....)))))).)))))))...(((..------(((......))).-.))). ( -23.00) >DroSec_CAF1 4429 85 - 1 UAUGGCUGGGAGCGUGCCAUAGACUCCAAGGGUCGUUCCUAUUACAUAAAGUGAGUAUUCCAACCUAAUAUC------AUUAUAU------AUCAUA ((((..((((((((.(((...(....)...)))))))))))...)))).(((((.((((.......))))))------)))....------...... ( -17.40) >DroSim_CAF1 11886 89 - 1 UAUGGCUGGGAGCGUGCCAUAGACUCCAAGGGUCGUUCCUAUUACAUAAAGUGAGUAUUCCAACAUAAUAUC------AUUAUAU--GAUAAUCAAA ((((((((....)).))))))((((.....))))..........((((.(((((.(((......)))...))------))).)))--)......... ( -19.30) >DroEre_CAF1 4562 90 - 1 UAUGGCUGGGAGCGUGCCAUAGACUCCAAGGGUCGUUCCUACUAUAUAAAGUGAGUAUAAUGCCACCACA------AUGUCAUAUAUAAUC-UUACG (((((.((((((((.(((...(....)...))))))))))))))))....((((((((((((.((.....------.)).))).))))..)-)))). ( -22.40) >DroYak_CAF1 12233 96 - 1 UAUGGCUGGGAGCGUGCCAUAGACUCCAAGGGUCGUUCCUACUACAUAAAGUGAGUAUCCUCCCAUAAUAUAUAUCAUAUCAUAUAUAGUC-UUACA ...(((((((((.(((((((.((((.....))))((.......)).....))).)))).))))))...(((((((......))))))))))-..... ( -24.40) >DroMoj_CAF1 4717 84 - 1 UACGGCUGGGAGCGUGCCAUAGAUUCCAAGGGUCGUUCCUAUUAUAUCAAGUAAGUAGGCCU---CAACC------AAGUGGUGUAUA----ACCAA ...(((((((((((.(((...(....)...)))))))))).((((.....))))...)))).---.....------...((((.....----)))). ( -21.40) >consensus UAUGGCUGGGAGCGUGCCAUAGACUCCAAGGGUCGUUCCUAUUACAUAAAGUGAGUAUCCCAACAUAAUAUC______AUCAUAUAUA_UC_UCAAA ((((..((((((((.(((...(....)...)))))))))))...))))................................................. (-14.29 = -14.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:47 2006