Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,489,000 – 1,489,114 |
Length | 114 |
Max. P | 0.515471 |
Location | 1,489,000 – 1,489,114 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.21 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -22.09 |
Energy contribution | -22.32 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.20 |
Mean z-score | -1.02 |
Structure conservation index | 0.70 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1489000 114 - 27905053 -AUGUGCAGUAGAAUCCAUGAUAAAGAUUCAUCCAAAAAGAAAUACUCACAGAGUAGCCAGGGCAAUGCCGCUCUUGGGAUCCCAAAUCUUGAUGGGUUGCUGGUUGUCCUUGCU -.((((.(((((((((.........))))).((......))..))))))))....(((.((((((((((.(((((..((((.....))))..).)))).))..)))))))).))) ( -33.50) >DroGri_CAF1 1822 94 - 1 ACUAUACGGAUGGA------AU-----UUAU----------UAUACUUACAGUGUGGCCAGUGCUAUGCCGCUCUUGGGAUCCCAGAUCUUGAUGGGCUGCUGGUUAUCCUUGCU .......(((((..------..-----....----------(((((.....)))))((((((((...)).(((((..(((((...)))))..).)))).)))))))))))..... ( -26.20) >DroSec_CAF1 2311 114 - 1 -AUGUGCGGUAGAAGCCAUGAUGUGAAUUGUUCUAAAAACGAAUACUCACAGAGUAGCCAGGGCAAUGCCGCUCUUGGGAUCCCAAAUCUUGAUGGGUUGCUGGUUGUCCUUGCU -...((((((....)))....(((((..(((((.......))))).)))))..)))((.((((((((((.(((((..((((.....))))..).)))).))..)))))))).)). ( -34.90) >DroSim_CAF1 2309 114 - 1 -AUGUGCGGUAGAAGCCACGAUGUGAAUUGUUCUAAAAACGAAUACUCACAGAGUAGCCAGGGCAAUGCCGCUCUUGGGAUCCCAAAUCUUGAUGGGUUGCUGGUUGUCCUUGCU -......(((....)))((..(((((..(((((.......))))).)))))..))(((.((((((((((.(((((..((((.....))))..).)))).))..)))))))).))) ( -36.30) >DroEre_CAF1 3050 115 - 1 AAUGUGCGGUAGAAACCAUAAUGAGAUAGAGUUUAAUAACAAAUACUCACAGUGUAGCGAGGGCGAUGCCGCUCUUGGGAUCCCAAAUUUUGAUGGGUUGCUGGUUGUCCUUACU ...(((.((....(((((...((((.((..(((....)))...))))))....((((((((((((....))))))))....((((........)))))))))))))..)).))). ( -28.40) >DroYak_CAF1 4863 104 - 1 AAUGUGCGGUAGAAACCAAGAUG-----CGGUUUG------AGUACUCACAAAGUAGCGAGGGCAAUGCCGCUCUUUGGAUCCCAAAUUUUGAUGGGCUGCUGGUUGUCCUUACU ..((((.((((.(((((......-----.))))).------..))))))))....((..((((((((((.((((.(..((........))..).)))).))..))))))))..)) ( -30.90) >consensus _AUGUGCGGUAGAAACCAUGAUG_GAAUUGUUCUAAAAAC_AAUACUCACAGAGUAGCCAGGGCAAUGCCGCUCUUGGGAUCCCAAAUCUUGAUGGGUUGCUGGUUGUCCUUGCU ..((((.((((................................))))))))....(((.((((((((((.(((((..((((.....))))..).)))).))..)))))))).))) (-22.09 = -22.32 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:17 2006