Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,917,755 – 10,917,846 |
Length | 91 |
Max. P | 0.558665 |
Location | 10,917,755 – 10,917,846 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 88.45 |
Mean single sequence MFE | -35.87 |
Consensus MFE | -27.33 |
Energy contribution | -27.67 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.76 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10917755 91 - 27905053 UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUAUGGAGCUG--------UAUGGCU---UGUGG .......((..(((((.(((((((...((((((...((..((((.(....).))))..))...))))))....))).))--------)))))))---..)). ( -35.60) >DroSec_CAF1 188172 102 - 1 UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUGUGGAGCUGUGGAGCAGUAUGUCUGUGUGUGG .......(((((((((((((.(.((..((((((...((..(((((.((.......))..)))))...))..))))))..))).)))))).)))))))..... ( -36.30) >DroEre_CAF1 187690 98 - 1 UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUGAGCCUAUGGAGCUGUGGAGCUGUGGAGCUGUGGGGCU----GUGG ....((.(((((.((.(..(((((...((((((...((..((((.(....).))))..))...))))))....))).))..)))))))).))..----.... ( -35.70) >consensus UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUGUGGAGCUGUGGAGC_GUAUGGCU___UGUGG ...............(((.(((.....((((((...((..((((.(....).))))..))...)))))).))).)))......................... (-27.33 = -27.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:44 2006