Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,917,419 – 10,917,527 |
Length | 108 |
Max. P | 0.560871 |
Location | 10,917,419 – 10,917,527 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 95.37 |
Mean single sequence MFE | -23.87 |
Consensus MFE | -21.17 |
Energy contribution | -21.07 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.82 |
Structure conservation index | 0.89 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10917419 108 + 27905053 GAAAACAAAGUCAAAGAGGAAGGUGAAGUAGAAACCGAGAAGAGAAGCAGAAUCAAGAAAUAUUUUGUUGUGUGUACUCAAUUUUAAGUGGCACUUCAACUUCGUGUA ..............(.(.((((.((((((.(..((..(((((((..(((.((.(((((....))))))).)))...)))..))))..))..))))))).)))).).). ( -21.80) >DroSec_CAF1 187842 108 + 1 GAAAACAAAGUCAAAGAGGAGGGUGAAGUAGAAACCGAGAAGAGAAGCAGAACCAAGAAAUAUUUUGUUGUGUGUACUCAACUUUAAGUGGCACUUCAACUUCGUGUA ..............(.(.((((.((((((.(..((.(((..(((..(((.(((.((((....))))))).)))...)))..)))...))..))))))).)))).).). ( -22.40) >DroEre_CAF1 187367 107 + 1 GAAAACAGAGUCAAAGAGGAAGGUGAAGUGGAAACCGAGAGGAGAAGCAGAA-CAAGAAAUAUUUUGUUGUGUGUACUCAACUUUAAGUGGCACUUCUACUUCGUGUA ..............(.(.((((..((((((...((..(((((((..(((.((-(((((....))))))).)))...)))..))))..))..))))))..)))).).). ( -27.40) >consensus GAAAACAAAGUCAAAGAGGAAGGUGAAGUAGAAACCGAGAAGAGAAGCAGAA_CAAGAAAUAUUUUGUUGUGUGUACUCAACUUUAAGUGGCACUUCAACUUCGUGUA ..............(.(.((((.((((((.(..((.(((..(((..(((.((.(((((....))))))).)))...)))..)))...))..))))))).)))).).). (-21.17 = -21.07 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:43 2006