Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,903,214 – 10,903,319 |
Length | 105 |
Max. P | 0.825327 |
Location | 10,903,214 – 10,903,319 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.67 |
Mean single sequence MFE | -20.02 |
Consensus MFE | -9.14 |
Energy contribution | -9.95 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.20 |
Mean z-score | -2.43 |
Structure conservation index | 0.46 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10903214 105 + 27905053 -----------AGAACUCAACACUUGCCAAUAGUGCUAUUUUGUACCACUCAAAAGGGUAAACUACAGCGUUUAUUCUUUU-GUUUGUUAUUUAUAUUCUCCUUUAAGCAAAC---AUUU -----------............((((.....((((......))))((..(((((((((((((......))))))))))))-)..))....................))))..---.... ( -20.30) >DroSec_CAF1 174132 119 + 1 GAUACAACAACACAACUCAACACUUGCCAAUAGUGUUAUUUUGUACCACUCAAAAGGGUAAACUACAACGUUUAUUCUUUU-GUUUGUUAUUUAUAUUCUCCUUUUAGCAAACAAAAUUU ...........((((...((((((.......))))))...)))).......((((((((((((......))))))))))))-((((((((...............))))))))....... ( -23.06) >DroSim_CAF1 176898 86 + 1 -----------AGAACUCAACACUUGCCAAUAGUGUUAUUUUGUACCACUCAAAAGGGUAAACUACAACGUUUAUUCUUUU-GUUUGUUAUUUAUAUU---------------------- -----------.......((((((.......)))))).....(((.((..(((((((((((((......))))))))))))-)..)).))).......---------------------- ( -19.20) >DroEre_CAF1 171651 106 + 1 -----------AGAAUUCAACACUUGCCAAUGGUGCUAUUUUGUACCACUUAGAAGGGUAAACUGAAACGCGAGUGCUCUUAAUUUCUUAUUUAUUUUAUCCCUAAAGCCACC---UUUU -----------.........(((((((...((((((......))))))......((......)).....))))))).....................................---.... ( -17.50) >consensus ___________AGAACUCAACACUUGCCAAUAGUGCUAUUUUGUACCACUCAAAAGGGUAAACUACAACGUUUAUUCUUUU_GUUUGUUAUUUAUAUUCUCCUUUAAGCAAAC___AUUU ............((((..((((((.......))))))..............(((((..(((((......)))))..))))).)))).................................. ( -9.14 = -9.95 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:37 2006