Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,900,945 – 10,901,079 |
Length | 134 |
Max. P | 0.923763 |
Location | 10,900,945 – 10,901,039 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 90.21 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -19.76 |
Energy contribution | -19.72 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.24 |
Mean z-score | -1.83 |
Structure conservation index | 0.82 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10900945 94 + 27905053 UAAUGGUGUUGGGAAAGUGGUCAAAGGUGUAGCAUCUAAGCAUAUUUUCUAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAA .....((.((((((((...((...(((((...)))))..))...)))))))).))..((.((....))))..((((((((....)))))))).. ( -24.30) >DroSec_CAF1 166202 94 + 1 UAAUGGUGUUGGGAAAGUGGUCAAAGGUGUAGCAUCUAAACAUAUUUUCUAAGGUAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAA ....(((....((((((((.....(((((...))))).....))))))))......)))(((....)))...((((((((....)))))))).. ( -20.10) >DroSim_CAF1 174671 94 + 1 UAAUGGUGUUGGGAAAGUGGUCAAAGGUGUAGCAUCUAAGCAUAUUUUCUAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAA .....((.((((((((...((...(((((...)))))..))...)))))))).))..((.((....))))..((((((((....)))))))).. ( -24.30) >DroEre_CAF1 169413 92 + 1 AAAUGGUGUUGGAAAAGCGGUCAAAGGUGCAGCUU--AAGCAUAUUUUCUAAGGCAAUCUUGGUAAUGGAAAUUUGUGGCGGUCGCCUCAGAAA .....((.(((((((((((.(....).))).((..--..))...)))))))).)).................((((.(((....))).)))).. ( -20.80) >DroYak_CAF1 178494 94 + 1 CAAUGGUGUUGGAAAAGUGGUCAAAGGUGUACCUUCUGGGCAUAUUUUCCAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGUGGCCACAGGAA .....((.(((((((((((.(((((((....)))).))).))).)))))))).))..((.((....))))..((((((((....)))))))).. ( -30.80) >consensus UAAUGGUGUUGGGAAAGUGGUCAAAGGUGUAGCAUCUAAGCAUAUUUUCUAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAA .....((.((((((((...((...(((((...)))))..))...)))))))).)).................((((((((....)))))))).. (-19.76 = -19.72 + -0.04)
Location | 10,900,965 – 10,901,079 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.44 |
Mean single sequence MFE | -27.62 |
Consensus MFE | -23.90 |
Energy contribution | -22.02 |
Covariance contribution | -1.88 |
Combinations/Pair | 1.31 |
Mean z-score | -1.43 |
Structure conservation index | 0.87 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10900965 114 + 27905053 UCAAAGGUGUAGCAUCUAAGCAUAUUUUCUAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAAUAUGUGCCACAUGAGUGGAAAGCUACGACUCUUAGUAAAA ...((((((((((......((((((((((((..((.......))..))))).((((((((....))))))))))))))).((((....))))...))))).)).)))....... ( -32.50) >DroSec_CAF1 166222 114 + 1 UCAAAGGUGUAGCAUCUAAACAUAUUUUCUAAGGUAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAAUAUGUGCCACAUGAGUGAAAAACUACGACUCUUAGUAAAA ...(((((((((.......(((((((((.........((.((....))))....((((((....)))))))))))))))..(((....))).....)))).)).)))....... ( -23.10) >DroSim_CAF1 174691 114 + 1 UCAAAGGUGUAGCAUCUAAGCAUAUUUUCUAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAAUAUGUGCCACAUGAGUGAAAAACUACGACUCUUAGUAAAA ...(((((((((.......(((((((((((..((((.(((((..(((....)))..))).)).))))..))))).))))))(((....))).....)))).)).)))....... ( -26.00) >DroEre_CAF1 169433 112 + 1 UCAAAGGUGCAGCUU--AAGCAUAUUUUCUAAGGCAAUCUUGGUAAUGGAAAUUUGUGGCGGUCGCCUCAGAAAUAUGUGCUGCAUGACUGGAAAACUACGACUCUUAGUAAAA ......(((((((..--..((((((((.((.((((.(((.....(((....)))......))).)))).))))))))))))))))).((((((..........)).)))).... ( -27.30) >DroYak_CAF1 178514 114 + 1 UCAAAGGUGUACCUUCUGGGCAUAUUUUCCAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGUGGCCACAGGAAUAUGUGGUGCAUGAGUGAAAAACUACGACUCUUGGUAAAA ((((..(((((((......((((((((((((..((.......))..))))).((((((((....))))))))))))))))))))))((((...........))))))))..... ( -29.20) >consensus UCAAAGGUGUAGCAUCUAAGCAUAUUUUCUAAGGCAAUCUCAGUAAUGGAAAUUUGUGGUGGAUGCCACAGAAAUAUGUGCCACAUGAGUGAAAAACUACGACUCUUAGUAAAA (((...((((.((......((((((((((((..((.......))..))))).((((((((....))))))))))))))))).))))...)))...((((.......)))).... (-23.90 = -22.02 + -1.88)
Location | 10,900,965 – 10,901,079 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 90.44 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -19.52 |
Energy contribution | -19.60 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -1.74 |
Structure conservation index | 0.80 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10900965 114 - 27905053 UUUUACUAAGAGUCGUAGCUUUCCACUCAUGUGGCACAUAUUUCUGUGGCAUCCACCACAAAUUUCCAUUACUGAGAUUGCCUUAGAAAAUAUGCUUAGAUGCUACACCUUUGA ........((((..(((((...((((....))))..(((((((.(((((......)))))...........(((((.....))))).))))))).......)))))..)))).. ( -27.50) >DroSec_CAF1 166222 114 - 1 UUUUACUAAGAGUCGUAGUUUUUCACUCAUGUGGCACAUAUUUCUGUGGCAUCCACCACAAAUUUCCAUUACUGAGAUUACCUUAGAAAAUAUGUUUAGAUGCUACACCUUUGA ........((((..(((((...((((....)))).((((((((.(((((......)))))...........(((((.....))))).))))))))......)))))..)))).. ( -24.30) >DroSim_CAF1 174691 114 - 1 UUUUACUAAGAGUCGUAGUUUUUCACUCAUGUGGCACAUAUUUCUGUGGCAUCCACCACAAAUUUCCAUUACUGAGAUUGCCUUAGAAAAUAUGCUUAGAUGCUACACCUUUGA .........((((.(........))))).((((((((((((((.(((((......)))))...........(((((.....))))).)))))))......)))))))....... ( -23.60) >DroEre_CAF1 169433 112 - 1 UUUUACUAAGAGUCGUAGUUUUCCAGUCAUGCAGCACAUAUUUCUGAGGCGACCGCCACAAAUUUCCAUUACCAAGAUUGCCUUAGAAAAUAUGCUU--AAGCUGCACCUUUGA ..((((........)))).....(((...((((((.((((((((((((((((.(.....................).))))))))).)))))))...--..))))))...))). ( -26.40) >DroYak_CAF1 178514 114 - 1 UUUUACCAAGAGUCGUAGUUUUUCACUCAUGCACCACAUAUUCCUGUGGCCACCACCACAAAUUUCCAUUACUGAGAUUGCCUUGGAAAAUAUGCCCAGAAGGUACACCUUUGA .....(((((((((.((((.........(((.....))).....(((((......)))))..........)))).))))..)))))............(((((....))))).. ( -19.90) >consensus UUUUACUAAGAGUCGUAGUUUUUCACUCAUGUGGCACAUAUUUCUGUGGCAUCCACCACAAAUUUCCAUUACUGAGAUUGCCUUAGAAAAUAUGCUUAGAUGCUACACCUUUGA .........((((.(.......).)))).((((((((((((((.(((((......)))))...........(((((.....))))).)))))))......)))))))....... (-19.52 = -19.60 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:36 2006