Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,896,757 – 10,896,853 |
Length | 96 |
Max. P | 0.500000 |
Location | 10,896,757 – 10,896,853 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -17.78 |
Consensus MFE | -12.21 |
Energy contribution | -11.43 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.33 |
Mean z-score | -1.13 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10896757 96 + 27905053 AAAAAAAAAAAGAAAA--CC---AAUUGGAAUGGGAAAUGAGCUUGGGCUGUGUGGAUAAGGCCAAAAC-UGUAGCCGGAAUUAAGGCAAAGGCAAUGCCAU ................--((---....)).((((...((..((((.((((..........)))).....-....(((........)))..)))).)).)))) ( -16.40) >DroSec_CAF1 161941 85 + 1 AAA-----------AA--CC---AAUUGGAAUGGGAAAUGAGCUUGGGCUGUGUGGAUAAGGCCAAAAC-UGUAGCCGGAAUUAAGGCAAAGGCAAUGCCAU ...-----------..--((---....)).((((...((..((((.((((..........)))).....-....(((........)))..)))).)).)))) ( -16.40) >DroSim_CAF1 170031 85 + 1 AAA-----------AA--CC---AAUUUGAAUGGGAAAUGAGCUUGGGCUGUGUGGAUAAGGCCAAAAC-UGUAGCCGGAAUUAAGGCAAAGGCAAUGCCAU ...-----------..--((---(.......)))....(((..((.(((((..(((......)))....-..))))).)).))).((((.......)))).. ( -16.30) >DroEre_CAF1 165095 81 + 1 AAA---------------GC---AAUUGGAAUGGGAAAUGAGCUUGGCCUG--UGGAUAAAGCCAAAAC-UGUAGCCGGAAUUAAGGCAGAGGAAAAGCCAU ...---------------..---..............(((.((((..(((.--(((......)))....-....(((........)))..)))..))))))) ( -17.60) >DroYak_CAF1 174193 85 + 1 AAA-----------AAAUGC---AAUUGGAAUGGGAAAUGAGCUUGGCCUG--UGGAUAAAGCCAAAAC-UGUAGCCGGAAUUAAGGCGGAGGCAGAGCCAU ...-----------......---..............(((.((((.((((.--(((......)))....-....(((........)))..)))).))))))) ( -20.00) >DroAna_CAF1 165342 82 + 1 AAA-----------AG--CCAGUGAUUGGAAUGGAAAAUGAGCUUGGCUUG--UGGCUGGGGCCAGAAUUUGUUGCUGG-AUUAUGGCUA----AAAACUAU ...-----------((--(((.((((((.((..((...((..((..((...--..))..))..))...))..)).)..)-))))))))).----........ ( -20.00) >consensus AAA___________AA__CC___AAUUGGAAUGGGAAAUGAGCUUGGCCUG__UGGAUAAGGCCAAAAC_UGUAGCCGGAAUUAAGGCAAAGGCAAAGCCAU ..............................((((....((.((((...((....))...)))))).........(((........)))..........)))) (-12.21 = -11.43 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:33 2006