| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 297,996 – 298,086 |
| Length | 90 |
| Max. P | 0.687507 |
| Location | 297,996 – 298,086 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.31 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -15.84 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 297996 90 + 27905053 AACUAUAAUAUAACCUACAUAUAA-----------AACC-UAUUUGGAAUGCCAUGGUUUCUUGGCCGCUGGUGUAUCCCAGUGGAGCCAAGUGAGAAAAAA .......................(-----------((((-....(((....))).)))))((((((((((((......))))))..)))))).......... ( -22.40) >DroSec_CAF1 33443 91 + 1 AACUUUAAUAUAGCCUAUAUAUGA-----------AACCCCAUUUGGAAUGCCAUGGUUUCUUGACCGCUGGUGUAUGCCAGUGGAGCCGAGCGAGAGAAAA ..((((......((........((-----------((((.....(((....))).))))))....((((((((....)))))))).))......)))).... ( -25.00) >DroSim_CAF1 35130 91 + 1 AACUUUAAUAUAACCUAUAAAUGA-----------AACCGCAUUUGGAAUGCCAUGGUUUCUUGACCGCUGGUGUAUGCCAGUGGAGCCGAGCGAGAGAAAA ..((((................((-----------((((((((.....))))...))))))....((((((((....)))))))).........)))).... ( -24.50) >DroEre_CAF1 36037 99 + 1 --CAAUAAUAUAUUCUAUUUAAGAUUCAACAAAACAACACCAUUUGGUAUGGC-UGGUUUUUUGACCGCUGGUGUAUGCCAGUGGAGCGGAGUGAGAGAAAU --........((((((.........((((.(((((....((((.....)))).-..)))))))))((((((((....))))))))...))))))........ ( -25.60) >consensus AACUAUAAUAUAACCUAUAUAUGA___________AACCCCAUUUGGAAUGCCAUGGUUUCUUGACCGCUGGUGUAUGCCAGUGGAGCCGAGCGAGAGAAAA ........................................(((((((....((..((((....))))((((((....))))))))..)))))))........ (-15.84 = -16.52 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:04 2006