| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,888,452 – 10,888,550 |
| Length | 98 |
| Max. P | 0.718611 |
| Location | 10,888,452 – 10,888,550 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 85.48 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -18.76 |
| Energy contribution | -18.92 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10888452 98 + 27905053 ACCUCUCGAAAGGAUGAAAGCGACACUUUUCGUAGGUGGGUUUCUAUAGAGAAAGCGAGUUUAAGUUUCCAGUAAACUUGAAUGCGCAAGAGUUAAAG ((((..(((((((.((.......))))))))).))))...(((((....)))))(((.((((((((((.....)))))))))).)))........... ( -25.10) >DroSec_CAF1 153777 98 + 1 ACCUCUCGAAAGGAUGAAAAGGACACUUUUCGUAGGUGGGUUUCCAUAGAGAAAGCGAGUUUAAGUUUCCAGUAAACUUGAAUGCGCAAGAGUUAAAG ...((((......((((((((....))))))))..((((....)))).))))..(((.((((((((((.....)))))))))).)))........... ( -27.60) >DroSim_CAF1 161921 98 + 1 ACCUCUCGAAAGGAUGAAAAGGACACUUUUCGUAGGUGGGUUUCCAUAGAGAAAGCGAGUUUAAGUUUCCAGUAAACCUGAAUGCGCAAGAGUUAAAG ...((((......((((((((....))))))))..((((....)))).))))..(((.(((((.((((.....)))).))))).)))........... ( -23.50) >DroEre_CAF1 156716 94 + 1 ACCUCUCGAAAGGAUGGAAGGGACACUUUUUGUAGAAGGGU--CUAUAAAGAAAGUGAGUUUAAGUUCUCAGCAAACUUGAACGCGUAAGAGUUAA-- .((..((....))..))......(((((((((((((....)--)))))..))))))).(((((((((.......))))))))).............-- ( -22.90) >DroYak_CAF1 165761 90 + 1 ACCUCUCGAAAGGAGGGAAGGGACACUUUUCGUAGAUGGGU--CUAUAAAGAAAGUGCAUUUGAGUUU------AACUUGAACGCUUAGGAGUUAAAG .((((.(....))))).(((.(.(((((((.(((((....)--))))...)))))))..((..((...------..))..))).)))........... ( -22.00) >consensus ACCUCUCGAAAGGAUGAAAGGGACACUUUUCGUAGGUGGGUUUCUAUAGAGAAAGCGAGUUUAAGUUUCCAGUAAACUUGAAUGCGCAAGAGUUAAAG .((((((((((((.((.......))))))))).))).))...............(((.((((((((((.....)))))))))).)))........... (-18.76 = -18.92 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:33 2006