Locus 3998

Sequence ID 3R_DroMel_CAF1
Location 10,885,307 – 10,885,398
Length 91
Max. P 0.998013
window6410

overview

Window 0

Location 10,885,307 – 10,885,398
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 73.48
Mean single sequence MFE -24.35
Consensus MFE -14.84
Energy contribution -15.53
Covariance contribution 0.70
Combinations/Pair 1.18
Mean z-score -3.43
Structure conservation index 0.61
SVM decision value 2.98
SVM RNA-class probability 0.998013
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10885307 91 - 27905053
GCUAGAUAAUGUCACACGGCGUUGUCUUUUC-GCAGAGCAUAUACAAUUAUGCGCGCACUGCGGAAAAAUCCUUGAACAGUCAAGGACUAUA
....(((((((((....)))))))))(((((-((((.(((((......))))).....)))))))))..(((((((....)))))))..... ( -33.70)
>DroSec_CAF1 150674 72 - 1
GCUAGAUAAUGUCACACGGCGUUGUCUUUUC-GCAGAGCAUAUACAAUUAUGCAGGCACUGCGAAAAAAUCCU-------------------
....(((((((((....)))))))))(((((-((((.(((((......))))).....)))))))))......------------------- ( -24.90)
>DroSim_CAF1 158486 72 - 1
GCUAGAUAAUGUCACACGGCGUUGUCUUUUC-GCAGAGCAUAUACAAUUAUGCAGGCACUGCGAAAAAAUCUU-------------------
....(((((((((....)))))))))(((((-((((.(((((......))))).....)))))))))......------------------- ( -24.90)
>DroEre_CAF1 153602 91 - 1
GCUAGAUAAUGUCACACGGCGUUGUCUUUUC-GCAGAGCAUAUACAAUUAUGCAGGCACUGCUAAAAAAUCCUUGAACAACCAAGCAAUUCA
(((.(((((((((....)))))))))((((.-((((.(((((......))))).....)))).))))................)))...... ( -22.10)
>DroYak_CAF1 162651 91 - 1
GUUAGAUAAUGUCACACGGCGUUGUCCUUUC-GCAGAGCAUAUACAAUUAUGCAGGCACUGCGAAAAAAUCCUUUAACAGCCAAGCAAAUAA
(((((((((((((....))))))))).((((-((((.(((((......))))).....))))))))........)))).............. ( -25.60)
>DroPer_CAF1 193582 74 - 1
GCUAGAUAAUGUCACACGGUGUUGUCUUUUGCUCGGAA--AAGACGCCAAAGCA--CACUACCAAAC-----------ACCCACACACA---
.................(((((((((((((......))--)))))((....)).--........)))-----------)))........--- ( -14.90)
>consensus
GCUAGAUAAUGUCACACGGCGUUGUCUUUUC_GCAGAGCAUAUACAAUUAUGCAGGCACUGCGAAAAAAUCCU_____A_CCAAGCA_____
....(((((((((....))))))))).((((.((((.(((((......))))).....)))))))).......................... (-14.84 = -15.53 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:32 2006