Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,880,400 – 10,880,495 |
Length | 95 |
Max. P | 0.741190 |
Location | 10,880,400 – 10,880,495 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -13.89 |
Energy contribution | -12.53 |
Covariance contribution | -1.36 |
Combinations/Pair | 1.30 |
Mean z-score | -1.75 |
Structure conservation index | 0.74 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10880400 95 + 27905053 ACUCGGCAUUCAUUAUGCCUCCCUUACGGCUGGUCUACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUC---CU------AGCCCU---- ....(((((.....)))))........((((((..........(((((((.((......)).)))))))....((....))......---))------))))..---- ( -18.80) >DroPse_CAF1 187448 104 + 1 AU-UGGCAUUCAUUAUGCCUCCCAGUUGGCAGGCAUACACGUCGUAUGAUUAAUCUCAUUUCAUUAUGUUAUCGCUUAUGUUACAUC---UUCUAGGCAGCUCUCUCG ..-.(((......(((((((.((....)).))))))).((((...((((...........)))).))))....(((((.(.......---.).))))).)))...... ( -18.90) >DroEre_CAF1 148800 95 + 1 ACUCGGCAUUCAUUAUGCCUCCCUUACGGCUGGCCCACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUC---CU------AGCCCU---- ....(((((.....)))))........((((((..........(((((((.((......)).)))))))....((....))......---))------))))..---- ( -18.60) >DroYak_CAF1 157784 98 + 1 ACUCGGCAUUCAUUAGGCCUCCCUUACGGCUGGCCCACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUCCUCCU------AGCCCU---- ....((((((.....((((..((....))..))))........(((((((.((......)).))))))).......))))))..........------......---- ( -19.80) >DroAna_CAF1 149452 97 + 1 ACUCGGCAUUCAUUAUGCCUCCCACCGGGCUGGCCUACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUUAUGCUACAUC---UU----GCAUCCCC---- ....(((((.....))))).......(((...((....((((.((((((..........................)))))).)))).---..----))..))).---- ( -17.07) >DroPer_CAF1 188776 104 + 1 AU-UGGCAUUCAUUAUGCCUCCCAGUGGGCAGGCAUACACGUCGUAUGAUUAAUCUCAUUUCAUUAUGUUAUCGUUUAUGUUACAUC---UUCUAGGCAGCUCUCUCG ..-.(((((.....)))))....((.((((.((((((.(((.(((((((...........))).))))....))).))))))...((---.....))..)))).)).. ( -20.20) >consensus ACUCGGCAUUCAUUAUGCCUCCCAUACGGCUGGCCUACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUC___CU______AGCCCU____ ....(((((.......(((........)))((((....((((...((((...........)))).))))....))))))))).......................... (-13.89 = -12.53 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:31 2006