Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,872,557 – 10,872,654 |
Length | 97 |
Max. P | 0.544041 |
Location | 10,872,557 – 10,872,654 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -15.40 |
Consensus MFE | -9.90 |
Energy contribution | -12.10 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.64 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10872557 97 - 27905053 ACUAGUUGAAAAUGCUUGGAAGGCAACAUCAACUAACUAACUAACUGUUUUGUCACACACACUCAUACGAGUGUAAGACCAACCACCCACACACAUG ..(((((((...((((.....))))...)))))))...........(((..(((....((((((....))))))..))).))).............. ( -19.30) >DroSec_CAF1 138091 97 - 1 ACUAGUUGAAAAUGCUUGGAAGGCAACAUCAACUAACUAACUAACUGUUUUGUCACACACACUCAUAGGAGUGUAAGGCCAACCACCCACACACAUG ..(((((((...((((.....))))...)))))))..........(((..(((.....((((((....))))))..((....))....))).))).. ( -19.00) >DroSim_CAF1 144980 97 - 1 ACUAGUUGAAAAUGCUUGGAAGGCAACAUCAACUAACUAACUAACUGUUUUGUCACACACACUCAUAGGAGUGUAAGGCCAACCACCCACACACAUG ..(((((((...((((.....))))...)))))))..........(((..(((.....((((((....))))))..((....))....))).))).. ( -19.00) >DroEre_CAF1 140971 87 - 1 ACUAGUUGAAAAUGCUUGGAAGGCAACAUCAACUAA----CUAACUGUUUUGUCACACAC------ACUCCCAUAAAGCCCACCACCCACACACAUG ..(((((((...((((.....))))...))))))).----......(((((((.......------......))))))).................. ( -12.02) >DroAna_CAF1 142242 84 - 1 ACUAGUCGAAAAUGCUUAGAAGGCAUCAUAAACUAACUA--------UUUUUC--CACACACCCAUACAC-UG--GCACCCACAGCACACACACACU ..((((..(..(((((.....)))))..)..))))....--------......--..............(-((--.......)))............ ( -7.70) >consensus ACUAGUUGAAAAUGCUUGGAAGGCAACAUCAACUAACUAACUAACUGUUUUGUCACACACACUCAUACGAGUGUAAGGCCAACCACCCACACACAUG ..(((((((...((((.....))))...))))))).......................((((((....))))))....................... ( -9.90 = -12.10 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:30 2006