| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,863,919 – 10,864,015 |
| Length | 96 |
| Max. P | 0.791078 |
| Location | 10,863,919 – 10,864,015 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.05 |
| Mean single sequence MFE | -12.65 |
| Consensus MFE | -8.55 |
| Energy contribution | -8.30 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10863919 96 - 27905053 AAAAAGCGGAGAAGACAAAAAGAUAAACAAAAAAUUGACAAAAUGCUUUGAAAAAAGGGCUUAAUUGUGGUAGAUUGCAAUUCUACUUUAAAACGA- ...((((....................(((....)))........((((....)))).))))..(((.((((((.......)))))).))).....- ( -12.10) >DroSec_CAF1 133171 92 - 1 AAAAAGCGAAGGGGACAAAAAGAUAAAAAAAAAGUUGACAAAAUGCUUUGAAAAAAGGGCUUAAUUGUGGU-GAUUGCACAG----AUUGAACUGAU .....((((.(....)...................(.((((...(((((......)))))....)))).).-..)))).(((----......))).. ( -13.00) >DroEre_CAF1 136014 77 - 1 AGAAAGCA-AGGAGACAAAAAGAUAA----AAACUUGACAAGUUGCUUUGAAAAAAGGGCUUAAUUGUGGUAGAUUGCCAUA--------------- ...((((.-.(....)..........----...............((((....)))).))))...((((((.....))))))--------------- ( -13.30) >DroYak_CAF1 144671 78 - 1 AGAAAGCAAAGGAGGCAAAAAGAUAA----AAACUUGACAAGUUGCUUUGAAGAAAGGGCUUAAUUGUGGUAAAAUGCCAUU--------------- .............((((..(((....----...))).((((...(((((......)))))....)))).......))))...--------------- ( -12.20) >consensus AAAAAGCAAAGGAGACAAAAAGAUAA____AAACUUGACAAAAUGCUUUGAAAAAAGGGCUUAAUUGUGGUAGAUUGCAAUU_______________ .....(((..(....)...................(.((((...(((((......)))))....)))).).....)))................... ( -8.55 = -8.30 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:29 2006