Locus 3994

Sequence ID 3R_DroMel_CAF1
Location 10,857,809 – 10,857,907
Length 98
Max. P 0.606735
window6406

overview

Window 6

Location 10,857,809 – 10,857,907
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 67.98
Mean single sequence MFE -16.48
Consensus MFE -8.43
Energy contribution -8.60
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.51
SVM decision value 0.15
SVM RNA-class probability 0.606735
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10857809 98 - 27905053
UAAACAUAAAUCGCAUAAAAUACAAAUUAAAUGCUUGCCCAAUGGGGCGAC-ACUCCUCACUUUUCCCCAUUCUUCUGCUUUCUUUUUCC-CCG-------CUCUCU
............((((..(((....)))..))))((((((....)))))).-......................................-...-------...... ( -10.80)
>DroPse_CAF1 163820 94 - 1
UAAACAUAAAUCGCAUAAAAUACAAAUUAAAUGCAUGCCCAAUGGGGCUGCUGCUGCUCCUCCUACCCGGCUCUGCCUCUGUCUG---GCACC----------GGGU
............((((((........)))...(((.((((....))))))))))..........((((((...((((.......)---)))))----------)))) ( -26.30)
>DroEre_CAF1 129975 75 - 1
UAAACAUAAAUCGCAUAAAAUACAAAUUAAAUGCUUGCCCAAUGGGGCGGC-ACUCCUCACUUUUCCC-CG------------------------------UUCUCU
...............................((((.((((....)))))))-)...............-..------------------------------...... ( -11.30)
>DroYak_CAF1 138521 76 - 1
UAAACAUAAAUCGCAUAAAAUACAAAUUAAAUGCUUGCCCAAUGGGGCGAC-ACUCCUCACUUUUCCCCCC------------------------------AUCUCU
............((((..(((....)))..))))((((((....)))))).-...................------------------------------...... ( -10.80)
>DroAna_CAF1 131350 104 - 1
UAAACAUAAAUCGCAUAAAAUACAAAUUAAAUGCUUGCCCAAUGGAGCAUU-UCUCCUCACUUUUUCCAUUUUCUCUGGCUC-UGUUCUC-UGGUCUCUGGCCUGCA
............(((.............((((((((........)))))))-)........................((((.-....(..-..).....))))))). ( -13.10)
>DroPer_CAF1 164979 94 - 1
UAAACAUAAAUCGCAUAAAAUACAAAUUAAAUGCAUGCCCAAUGGGGCUGCUGCUGCUCCUCGUACCCGGCUCUGCCUCUGUCUG---GCACC----------GGGU
............((((..(((....)))..)))).......((((((..((....)).))))))((((((...((((.......)---)))))----------)))) ( -26.60)
>consensus
UAAACAUAAAUCGCAUAAAAUACAAAUUAAAUGCUUGCCCAAUGGGGCGGC_ACUCCUCACUUUUCCCCCCUCU_C__CU_U_UG____C_CC_________UCGCU
............((((..(((....)))..))))..((((....))))........................................................... ( -8.43 =  -8.60 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:28 2006