Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,843,437 – 10,843,536 |
Length | 99 |
Max. P | 0.576773 |
Location | 10,843,437 – 10,843,536 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.61 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -23.04 |
Energy contribution | -22.82 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.87 |
Structure conservation index | 0.82 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10843437 99 + 27905053 UGUGUGUGCAAUGUGGAAUGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC (((((.((((((((.....(((...(((((..((((((((......))))))))....))))).)))....))).))))).........)--))))..... ( -28.40) >DroSec_CAF1 112814 99 + 1 UGUGUGUGCGAUGUGGAAUGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC (((((.((((((((.....(((...(((((..((((((((......))))))))....))))).)))....))).))))).........)--))))..... ( -28.10) >DroSim_CAF1 119108 99 + 1 UGUGUGUGCGAUGUGGAAUGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC (((((.((((((((.....(((...(((((..((((((((......))))))))....))))).)))....))).))))).........)--))))..... ( -28.10) >DroEre_CAF1 115357 90 + 1 UGU---------GUGGAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACACGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAG--CACAAACAA (((---------((((.(((((...(((((..((((((((......))))))))....))))).)))))..((....)).......))).--))))..... ( -28.80) >DroYak_CAF1 123471 90 + 1 UGU---------GUGGAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACACGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC (((---------((((.(((((...(((((..((((((((......))))))))....))))).)))))..((....)).......)).)--))))..... ( -28.80) >DroAna_CAF1 116395 92 + 1 U---------AUGUGAAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGGUAGCAAACAAGCCAACGCACAAGCAC .---------..(((..(((((...(((((..((((((((......))))))))....))))).)))))..(((...((......))...))).....))) ( -26.00) >consensus UGU_______AUGUGGAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA__CACAAACAC ............(((.....((..........((((((((......))))))))((((((..(((......)))...))))))...))....)))...... (-23.04 = -22.82 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:25 2006