Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,484,571 – 1,484,672 |
Length | 101 |
Max. P | 0.500000 |
Location | 1,484,571 – 1,484,672 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.37 |
Mean single sequence MFE | -18.40 |
Consensus MFE | -16.49 |
Energy contribution | -16.93 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.45 |
Structure conservation index | 0.90 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1484571 101 + 27905053 AACGCUGUAAGUAAAUAAAUAAUUAGGAUCGCGAUCCAAUGAUAUUUGCGGUGAAAUGACCGACAGUAUUAAUAUAACGUCUAAUUGUUUGCAUUAAAUAU ..........((((((((.......((((....))))..(((((((..((((......))))..))))))).............))))))))......... ( -19.60) >DroSec_CAF1 3636 99 + 1 AACGCUGAAAGUAAAUAAACAAUUCGGAUA--GAUCCAAUGAUAUUUGCGGUCAAAUAACCAUCAGUAUUAAUAUAACGUUUAAUUGUUUGCAUUAAAUAU ...(((((..(((((((....(((.(((..--..))))))..)))))))(((......))).))))).(((((..((((......))))...))))).... ( -16.90) >DroSim_CAF1 3636 94 + 1 AACGCUGUAAGUAAAUAAACAAUUCGGAUC--GAUCCAAUGAUAUUUGCGGUCAAAUAACCGUCAGUA-----AUAACGUUUAAUUGUUUGCAUUAAAUAU .....(((((((((.(((((.....(((..--..))).....((((.(((((......))))).))))-----.....))))).)))))))))........ ( -18.70) >consensus AACGCUGUAAGUAAAUAAACAAUUCGGAUC__GAUCCAAUGAUAUUUGCGGUCAAAUAACCGUCAGUAUUAAUAUAACGUUUAAUUGUUUGCAUUAAAUAU ...(((((..(((((((....(((.((((....)))))))..)))))))(((......))).)))))...........(((((((.(....)))))))).. (-16.49 = -16.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:15 2006