Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,832,796 – 10,832,928 |
Length | 132 |
Max. P | 0.903641 |
Location | 10,832,796 – 10,832,906 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -18.32 |
Consensus MFE | -11.22 |
Energy contribution | -11.25 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.61 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10832796 110 - 27905053 -UUUUGCCACCUUUCACGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUCACGUGCAAUUAUUUUUACCACACCAGC------ACUUCCACAUC-GGUACGCACA-- -...(((.(((....((((.....((((....)))).))))(((((((.....))))))).....((((...................))------)).........-)))..)))..-- ( -17.21) >DroPse_CAF1 135324 114 - 1 -UUUUGCCACCUUUCAUGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUCUGCCCCGCCCAUACUGGCACACCC--ACU-GGCCCACACU-- -....((((.......(((((...((((....))))...(((((((((.....)))))))...)))))))..............(((......)))......--..)-))).......-- ( -22.60) >DroEre_CAF1 104705 114 - 1 -UUUUGCCAGCUUUCACGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUUCGUGCAAUUAUUUUUACCUCACCAACACAC--ACUUCCACAUC-GGUACGCGCA-- -...(((..((......((((...((((....)))).....(((((((.....))))))).....)))).........((((............--...........-)))).)))))-- ( -16.20) >DroWil_CAF1 117853 114 - 1 -UCUCUUAGUUUUUCACGCACAUUUGACACAAGUCACGCGUACUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUUGUCCACA--AACACAA--GCGCACACAUA-AUCACACACAUG -....((((((....((((.....((((....)))).)))).......))))))...........((((..((..((((....))--))...))--..)))).....-............ ( -12.60) >DroAna_CAF1 105958 111 - 1 -UUUUGCCACCUUUCAUGCAUAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUUUACCGCACCAGCACUC--CCU----CCUCUGGAACGAACA-- -...........(((.(((.....((((....))))((((((((((((.....)))))))...)))))..............)))((((.....--...----...))))...)))..-- ( -17.90) >DroPer_CAF1 135409 115 - 1 UUUUUGCCACCUUUCAUGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUCUGCACCGCCCAUACUGGCACACCC--ACU-GGCCCGCACU-- .....((((.......((((....((((....))))((((((((((((.....)))))))...)))))..........))))..(((......)))......--..)-))).......-- ( -23.40) >consensus _UUUUGCCACCUUUCACGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUUUACCACACCAACACUC__ACUCCC_CAUC_GGCACGCACA__ .................((((...((((....)))).....(((((((.....))))))).....))))................................................... (-11.22 = -11.25 + 0.03)
Location | 10,832,827 – 10,832,928 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 76.83 |
Mean single sequence MFE | -16.77 |
Consensus MFE | -12.49 |
Energy contribution | -12.72 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10832827 101 + 27905053 UAAAAAUAAUUGCACGUGAAAGUUUUUUAAUUAAAAACUACGCGUGACUUGUGUCAAAUGUGCGUGAAAGGUGGCAAAA----AAAGAUGAAAA---------CAUAAUGGAAA ............((((((..(((((((.....))))))).)))))).(((.(((((..(.........)..)))))...----.))).......---------........... ( -16.80) >DroVir_CAF1 147390 92 + 1 AAAAAAUAAUUGCACAUUCAAGUUUUUUAAUUAAAAACUACGCCCGAUUUGUGUGAAAUGUGCGCGAAAGGUGACAAAA----U-------AAG---------C--AUUGGAAA ..........(((.......(((((((.....))))))).((((...(((((((.......))))))).))))......----.-------..)---------)--)....... ( -16.90) >DroPse_CAF1 135359 109 + 1 CAGAAAUAAUUGCACGUAAAAGUUUUUUAAUUAAAAACUACGCGUGACUUGUGUCAAAUGUGCAUGAAAGGUGGCAAAA---AAA--AUGAAAAAUACAUACGUAUAAUGGAAA ..........(((((((...(((((((.....))))))).....((((....)))).)))))))...............---...--.......((((....))))........ ( -17.00) >DroWil_CAF1 117888 98 + 1 ACAAAAUAAUUGCACGUAAAAGUUUUUUAAUUAAAAAGUACGCGUGACUUGUGUCAAAUGUGCGUGAAAAACUAAGAGA----AA--AUGAA-U---------CAUAAUGAAAG ....................(((((((((........(((((..((((....))))..))))).)))))))))......----..--.....-.---------........... ( -15.70) >DroMoj_CAF1 144037 96 + 1 AUAAAAUAAUUGCACACACAAGUUUUUUAAUUAAAAACUACACGUAACUUGCGUCAAAUGUGCGUGAAAGGUAACGAAA----U---GUGAAAG---------C--ACUGCAAA .........((((((.(((((((((((.....)))))))..((((.....))))....)))).))..............----(---((....)---------)--)..)))). ( -17.20) >DroPer_CAF1 135444 112 + 1 CAGAAAUAAUUGCACGUAAAAGUUUUUUAAUUAAAAACUACGCGUGACUUGUGUCAAAUGUGCAUGAAAGGUGGCAAAAAAAAAA--AUGAAAAAUACAUACGUAUAAUGGAAA ..........(((((((...(((((((.....))))))).....((((....)))).))))))).....................--.......((((....))))........ ( -17.00) >consensus AAAAAAUAAUUGCACGUAAAAGUUUUUUAAUUAAAAACUACGCGUGACUUGUGUCAAAUGUGCGUGAAAGGUGACAAAA____AA__AUGAAAA_________CAUAAUGGAAA ..........(((((((...(((((((.....)))))))(((((.....)))))...))))))).................................................. (-12.49 = -12.72 + 0.22)
Location | 10,832,827 – 10,832,928 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 76.83 |
Mean single sequence MFE | -14.84 |
Consensus MFE | -10.27 |
Energy contribution | -10.52 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -1.42 |
Structure conservation index | 0.69 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10832827 101 - 27905053 UUUCCAUUAUG---------UUUUCAUCUUU----UUUUGCCACCUUUCACGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUCACGUGCAAUUAUUUUUA ...........---------...........----................((((...((((....)))).(.(.(((((((.....)))))))..).)))))........... ( -13.10) >DroVir_CAF1 147390 92 - 1 UUUCCAAU--G---------CUU-------A----UUUUGUCACCUUUCGCGCACAUUUCACACAAAUCGGGCGUAGUUUUUAAUUAAAAAACUUGAAUGUGCAAUUAUUUUUU ........--.---------...-------.----..(((.(((..(((((((..((((.....))))...))))(((((((.....))))))).))).))))))......... ( -12.40) >DroPse_CAF1 135359 109 - 1 UUUCCAUUAUACGUAUGUAUUUUUCAU--UUU---UUUUGCCACCUUUCAUGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUCUG ............(((((((........--...---..............((((.....((((....)))).))))(((((((.....)))))))..)))))))........... ( -14.70) >DroWil_CAF1 117888 98 - 1 CUUUCAUUAUG---------A-UUCAU--UU----UCUCUUAGUUUUUCACGCACAUUUGACACAAGUCACGCGUACUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUUGU ....((..(((---------(-(((((--..----......(((((((.((((.....((((....)))).))))............))))))).....))).))))))..)). ( -11.14) >DroMoj_CAF1 144037 96 - 1 UUUGCAGU--G---------CUUUCAC---A----UUUCGUUACCUUUCACGCACAUUUGACGCAAGUUACGUGUAGUUUUUAAUUAAAAAACUUGUGUGUGCAAUUAUUUUAU .(((((((--(---------....)))---.----.............(((((((((.((((....)))).))))(((((((.....))))))).))))))))))......... ( -23.00) >DroPer_CAF1 135444 112 - 1 UUUCCAUUAUACGUAUGUAUUUUUCAU--UUUUUUUUUUGCCACCUUUCAUGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUCUG ............(((((((........--....................((((.....((((....)))).))))(((((((.....)))))))..)))))))........... ( -14.70) >consensus UUUCCAUUAUG_________UUUUCAU__UU____UUUUGCCACCUUUCACGCACAUUUGACACAAGUCACGCGUAGUUUUUAAUUAAAAAACUUUUACGUGCAAUUAUUUUUU ...................................................((((...((((....)))).....(((((((.....))))))).....))))........... (-10.27 = -10.52 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:22 2006