Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,818,970 – 10,819,062 |
Length | 92 |
Max. P | 0.583289 |
Location | 10,818,970 – 10,819,062 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 85.66 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -23.39 |
Energy contribution | -24.89 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -3.03 |
Structure conservation index | 0.69 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10818970 92 - 27905053 GUGUGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAG----------AUGGCUCACAC (((((((....)))))))((((.....((((.......)))).)))).---....(((((....)))))...(((((((.....----------.)))))))... ( -33.80) >DroSec_CAF1 88550 92 - 1 GUGAGCCGAGUGGCACACGGCAAGCAAUGUAAAAUGAACGCAAUGCCA---CUACGUGACGAUAAUCGCACAUGGGCCACAUAG----------AUGGCUCACAC ((((((((.(((((....((((.((..............))..)))).---(((.(((.((.....))))).))))))))....----------.)))))))).. ( -34.24) >DroSim_CAF1 94602 92 - 1 GUGUGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAG----------AUGGCUCACAC (((((((....)))))))((((.....((((.......)))).)))).---....(((((....)))))...(((((((.....----------.)))))))... ( -33.80) >DroEre_CAF1 90968 102 - 1 GUGAGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAGCUAUGUAUAGGUGGCUCACGC ((((((((.(((((.((.((((.....((((.......)))).)))).---....(((((....)))))...)).)))))....(((....))).)))))))).. ( -36.20) >DroYak_CAF1 93154 102 - 1 GUGAGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAGCUAUGUGUUGGUGGCUCACUC (((((((.(((((((....((...((........))...))..)))))---))..(((((....)))))......((((((((....)))).))))))))))).. ( -38.00) >DroAna_CAF1 92298 84 - 1 GUGAGCCGAGCGGCACACGGCAGGGCAUGUGAAAUGAACGCAAUGCCAAUGCUACGUGAUGAUAAUCGCACAUGGGUCACAUAA--------------------- ((((.(((((((((.....))..((((((((.......))).)))))..))))..(((((....)))))...))).))))....--------------------- ( -28.70) >consensus GUGAGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA___CUACGUGAUGAUAAUCGCACAUGGGCCACAUAG__________AUGGCUCACAC (((.(((....))).)))((((.....((((.......)))).))))........(((((....)))))...(((((((................)))))))... (-23.39 = -24.89 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:17 2006