Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,818,202 – 10,818,293 |
Length | 91 |
Max. P | 0.941461 |
Location | 10,818,202 – 10,818,293 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.95 |
Mean single sequence MFE | -38.02 |
Consensus MFE | -24.05 |
Energy contribution | -23.42 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.31 |
Mean z-score | -2.60 |
Structure conservation index | 0.63 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10818202 91 + 27905053 ----GGCCAUGUUUGUGGCUUUUGGCAUUGUUUGCCGGCUGACAACAGUCAGCAAAAGUUUGCGCUGCCAGCGGUCGAGUGUGACU--CACUGCCUC----------- ----((((((....))))))..(((((.(((..((..((((((....))))))....))..))).)))))(((((.(((.....))--))))))...----------- ( -37.40) >DroPse_CAF1 111783 98 + 1 ----GGCCAUGUUUGUGGCUUUUGGUAUUGUUUGCCAGCUGACAACAGUCGGCAAAAGUUUAUGGCACCAGCGCUUCGGUGCGGCUGCCUCUGCCUC------AGCCU ----((((((....))))))...((((...((((((.((((....)))).)))))).......((((((.((((....)))))).))))..))))..------..... ( -39.60) >DroEre_CAF1 90156 89 + 1 ----GGCCAUGUUUGUGGCUUUUGGCAUUGUUUGCCGGCUGACAACAGUCGGCAAAAGUUGGCGCUGCCAGCGGUCGAGUGUGACU--C--UACCUC----------- ----((((((....))))))..........(((((((((((....))))))))))).((((((...))))))(((.(((.....))--)--.)))..----------- ( -39.00) >DroWil_CAF1 101255 98 + 1 CUAUGCUCAUGUUUGUGGCUUCUGCCAUUGUUUGCCAGCUGACAACAGUCAGCAAAAGUUUAUGCUGCCAGCGGUUGGGUU-GGUUGGUUUUGCCUC------AG--- ..............(((((....))))).((..((((((((((....)))))).............((((((......)))-)))))))...))...------..--- ( -28.20) >DroYak_CAF1 92297 100 + 1 ----GGCCAUGUUUGUGGCUUUUGGCAUUGUUUGCCGGCUGACAACAGUCGGCAAAAGUUUGCGCUGCCAGCGGUCGAGUGUGACU--C--UGCCUCUGCCUCAGCCU ----((((((....))))))....(((...(((((((((((....)))))))))))....)))((((.(((.(((.(((.....))--)--.))).)))...)))).. ( -44.30) >DroPer_CAF1 112118 98 + 1 ----GGCCAUGUUUGUGGCUUUUGGUAUUGUUUGCCAGCUGACAACAGUCGGCAAAAGUUUAUGGCACCAGCGCUUCGGUGCGGCUGCCUCUGCCUC------AGCCU ----((((((....))))))...((((...((((((.((((....)))).)))))).......((((((.((((....)))))).))))..))))..------..... ( -39.60) >consensus ____GGCCAUGUUUGUGGCUUUUGGCAUUGUUUGCCAGCUGACAACAGUCGGCAAAAGUUUACGCUGCCAGCGGUCGAGUGUGACU__CUCUGCCUC______AG___ ....((((((....)))))).((((((.(((..((..((((((....))))))....))..))).)))))).....(((.(((........))))))........... (-24.05 = -23.42 + -0.63)
Location | 10,818,202 – 10,818,293 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.95 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -18.96 |
Energy contribution | -18.13 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.27 |
Mean z-score | -2.22 |
Structure conservation index | 0.60 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10818202 91 - 27905053 -----------GAGGCAGUG--AGUCACACUCGACCGCUGGCAGCGCAAACUUUUGCUGACUGUUGUCAGCCGGCAAACAAUGCCAAAAGCCACAAACAUGGCC---- -----------..((((.((--.(((......))).((((((...((((....))))((((....))))))))))...)).))))....((((......)))).---- ( -33.30) >DroPse_CAF1 111783 98 - 1 AGGCU------GAGGCAGAGGCAGCCGCACCGAAGCGCUGGUGCCAUAAACUUUUGCCGACUGUUGUCAGCUGGCAAACAAUACCAAAAGCCACAAACAUGGCC---- .((((------(.........)))))((((((......))))))........(((((((.(((....))).)))))))...........((((......)))).---- ( -32.00) >DroEre_CAF1 90156 89 - 1 -----------GAGGUA--G--AGUCACACUCGACCGCUGGCAGCGCCAACUUUUGCCGACUGUUGUCAGCCGGCAAACAAUGCCAAAAGCCACAAACAUGGCC---- -----------..(((.--(--((.....))).)))((((((((((...............)))))))))).((((.....))))....((((......)))).---- ( -29.66) >DroWil_CAF1 101255 98 - 1 ---CU------GAGGCAAAACCAACC-AACCCAACCGCUGGCAGCAUAAACUUUUGCUGACUGUUGUCAGCUGGCAAACAAUGGCAGAAGCCACAAACAUGAGCAUAG ---..------...((..........-.........((..((((((........))))(((....))).))..))......((((....)))).........)).... ( -24.00) >DroYak_CAF1 92297 100 - 1 AGGCUGAGGCAGAGGCA--G--AGUCACACUCGACCGCUGGCAGCGCAAACUUUUGCCGACUGUUGUCAGCCGGCAAACAAUGCCAAAAGCCACAAACAUGGCC---- .(((((((((((.((((--(--((((......)))(((.....)))......))))))..))))).))))))((((.....))))....((((......)))).---- ( -38.90) >DroPer_CAF1 112118 98 - 1 AGGCU------GAGGCAGAGGCAGCCGCACCGAAGCGCUGGUGCCAUAAACUUUUGCCGACUGUUGUCAGCUGGCAAACAAUACCAAAAGCCACAAACAUGGCC---- .((((------(.........)))))((((((......))))))........(((((((.(((....))).)))))))...........((((......)))).---- ( -32.00) >consensus ___CU______GAGGCAGAG__AGCCACACCCAACCGCUGGCAGCACAAACUUUUGCCGACUGUUGUCAGCCGGCAAACAAUGCCAAAAGCCACAAACAUGGCC____ .............(((.......)))............(((((.........(((((((.(((....))).)))))))...)))))...((((......))))..... (-18.96 = -18.13 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:16 2006