Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,816,239 – 10,816,402 |
Length | 163 |
Max. P | 0.999701 |
Location | 10,816,239 – 10,816,338 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -24.64 |
Energy contribution | -25.62 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.08 |
Mean z-score | -1.63 |
Structure conservation index | 0.85 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10816239 99 + 27905053 GUAAAAAAUUAAUACAACGCGCAAUUAUGACCAACAACAGCGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGU .................(((((...((((.....((.(((.(((....))).))).))(((.((((.....)))).)))..)))).)))))........ ( -31.20) >DroSec_CAF1 85846 99 + 1 GUAAAAAAUUAAUACAACGCGCAAUUAUGACCAACAACAGCGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGU .................(((((...((((.....((.(((.(((....))).))).))(((.((((.....)))).)))..)))).)))))........ ( -31.20) >DroSim_CAF1 90159 99 + 1 GUAAAAAAUUAAUACAACGCGCAAUUAUGACCAACAACAGCGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGU .................(((((...((((.....((.(((.(((....))).))).))(((.((((.....)))).)))..)))).)))))........ ( -31.20) >DroEre_CAF1 88216 99 + 1 GUAAAAAAUUAAUACAACGCGCAAUUAUGACCAACAACGGCGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGCGCCCGAGAAUCGU ..................(((((..............(((.(((....))).)))((.(((.((((.....)))).))).)).)))))........... ( -26.90) >DroYak_CAF1 90280 99 + 1 GUAAAAAAUUAAUACAACGCGCAAUUAUGACCAACAACAGCGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGU .................(((((...((((.....((.(((.(((....))).))).))(((.((((.....)))).)))..)))).)))))........ ( -31.20) >DroAna_CAF1 87552 99 + 1 GUAAAAAAUUAAUACAGCUCGCAAUUAUGGGCAACAACGGCGAAAAGUGCCUCUAGUGGCCGGAGAGACUGUCAGAAGCAACAUGGGCGCGAGAAUCGU .................(((((..((((((....)..((((.(..((.....))..).))))...................)))))..)))))...... ( -21.80) >consensus GUAAAAAAUUAAUACAACGCGCAAUUAUGACCAACAACAGCGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGU .................(((((...((((.....((.(((.(((....))).))).))(((.((((.....)))).)))..)))).)))))........ (-24.64 = -25.62 + 0.97)
Location | 10,816,279 – 10,816,377 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 89.24 |
Mean single sequence MFE | -45.87 |
Consensus MFE | -41.22 |
Energy contribution | -42.92 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.04 |
Mean z-score | -3.28 |
Structure conservation index | 0.90 |
SVM decision value | 3.12 |
SVM RNA-class probability | 0.998488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10816279 98 + 27905053 CGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGUCAAUUACCGCUGACAGGGGUGUGGCCACAGGGGCGGUGG- ...((..((((((((.(((((((.....((((((((((.......((((.......)))).....))))))))))....))))))))))))))).)).- ( -51.40) >DroSec_CAF1 85886 98 + 1 CGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGUCAAUUACCGCUGACAGGGGUGUGGCCACAGGGGCGGUGG- ...((..((((((((.(((((((.....((((((((((.......((((.......)))).....))))))))))....))))))))))))))).)).- ( -51.40) >DroSim_CAF1 90199 98 + 1 CGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGUCAAUUACCGCUGACAGGGGUGUGGCCACAGGGGCGGUGG- ...((..((((((((.(((((((.....((((((((((.......((((.......)))).....))))))))))....))))))))))))))).)).- ( -51.40) >DroEre_CAF1 88256 91 + 1 CGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGCGCCCGAGAAUCGUCAAUUACCGCUGACAGGGGUGUGGCCACAGGG-------- .(((....))).((.((((((((.....((((((((((......(((.........)))......))))))))))....)))))))).)).-------- ( -42.00) >DroYak_CAF1 90320 99 + 1 CGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGUCAAUUACCGCUGACAGGGGUGUGGCCACAGGGGCGGUGGU ..((.(.((((((((.(((((((.....((((((((((.......((((.......)))).....))))))))))....))))))))))))))).).)) ( -51.80) >DroAna_CAF1 87592 92 + 1 CGAAAAGUGCCUCUAGUGGCCGGAGAGACUGUCAGAAGCAACAUGGGCGCGAGAAUCGUCAAUUACCGCUGACAGGACCAAGGCCACAAAAG------- ...............((((((.......(((((((..........((((.......))))........)))))))......)))))).....------- ( -27.19) >consensus CGGCAAGUGCCUCUGGUGGCCACUGGAACUGUCAGCGGCAACAUGGGCGCGAGAAUCGUCAAUUACCGCUGACAGGGGUGUGGCCACAGGGGCGGUGG_ ........((((((.((((((((.....((((((((((.......((((.......)))).....))))))))))....))))))))))))))...... (-41.22 = -42.92 + 1.69)
Location | 10,816,279 – 10,816,377 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.24 |
Mean single sequence MFE | -44.85 |
Consensus MFE | -41.45 |
Energy contribution | -42.03 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.10 |
Mean z-score | -4.46 |
Structure conservation index | 0.92 |
SVM decision value | 3.91 |
SVM RNA-class probability | 0.999701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10816279 98 - 27905053 -CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGGCCACCAGAGGCACUUGCCG -.....(((.((((((((((....((((((((((((((((.((.......))..)).)))))))))))))).....))))))).))).)))........ ( -47.40) >DroSec_CAF1 85886 98 - 1 -CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGGCCACCAGAGGCACUUGCCG -.....(((.((((((((((....((((((((((((((((.((.......))..)).)))))))))))))).....))))))).))).)))........ ( -47.40) >DroSim_CAF1 90199 98 - 1 -CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGGCCACCAGAGGCACUUGCCG -.....(((.((((((((((....((((((((((((((((.((.......))..)).)))))))))))))).....))))))).))).)))........ ( -47.40) >DroEre_CAF1 88256 91 - 1 --------CCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGGGCGCAUGUUGCCGCUGACAGUUCCAGUGGCCACCAGAGGCACUUGCCG --------..((((((((((....((((((((((((((((.((.....))....)).)))))))))))))).....))))))).))).(((....))). ( -46.90) >DroYak_CAF1 90320 99 - 1 ACCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGGCCACCAGAGGCACUUGCCG ......(((.((((((((((....((((((((((((((((.((.......))..)).)))))))))))))).....))))))).))).)))........ ( -47.40) >DroAna_CAF1 87592 92 - 1 -------CUUUUGUGGCCUUGGUCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCUUCUGACAGUCUCUCCGGCCACUAGAGGCACUUUUCG -------((((.((((((..((..(((((((.((((((((.((.......))..)).)))))).)))))))..))...)))))).)))).......... ( -32.60) >consensus _CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGGCCACCAGAGGCACUUGCCG ......(((.((((((((((....((((((((((((((((.((.....))....)).)))))))))))))).....)))))))).)).)))........ (-41.45 = -42.03 + 0.58)
Location | 10,816,298 – 10,816,402 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -31.38 |
Consensus MFE | -25.81 |
Energy contribution | -26.37 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.19 |
Mean z-score | -1.38 |
Structure conservation index | 0.82 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10816298 104 - 27905053 UUCCGGCUGCUCCCCCCUCUUUUUC----------------CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGG ....(((..(...............----------------...........)..))).(((..((((((((((((((((.((.......))..)).)))))))))))))).....))). ( -32.87) >DroSec_CAF1 85905 104 - 1 UUCCGGCUGCUGCCCCCUCCUUUUC----------------CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGG ....(((....)))...........----------------...((((....))))((((....((((((((((((((((.((.......))..)).)))))))))))))).....)))) ( -35.30) >DroSim_CAF1 90218 104 - 1 UUCCGGCUGCCGCCCCCUCUUUUUC----------------CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGG ....(((....)))...........----------------...((((....))))((((....((((((((((((((((.((.......))..)).)))))))))))))).....)))) ( -34.70) >DroEre_CAF1 88275 91 - 1 UUCCGGCGACG-CCCCCUCC----------------------------CCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGGGCGCAUGUUGCCGCUGACAGUUCCAGUGG ....(((.(((-........----------------------------...))).))).(((..((((((((((((((((.((.....))....)).)))))))))))))).....))). ( -33.90) >DroYak_CAF1 90339 120 - 1 UUCCGACUGCGGCCCCCUCCCCUCCCCUUACCAACGUUACACCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGG ..(((....))).............................((((.(((.....))).......((((((((((((((((.((.......))..)).)))))))))))))).....)))) ( -33.20) >DroAna_CAF1 87611 78 - 1 -----------ACCCC-------------------------------CUUUUGUGGCCUUGGUCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCUUCUGACAGUCUCUCCGG -----------.....-------------------------------......(((....((..(((((((.((((((((.((.......))..)).)))))).)))))))..)).))). ( -18.30) >consensus UUCCGGCUGCGGCCCCCUCCUUUUC________________CCACCGCCCCUGUGGCCACACCCCUGUCAGCGGUAAUUGACGAUUCUCGCGCCCAUGUUGCCGCUGACAGUUCCAGUGG ....((((((..........................................)))))).(((..((((((((((((((((.((.....))....)).)))))))))))))).....))). (-25.81 = -26.37 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:14 2006