Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,803,752 – 10,803,867 |
Length | 115 |
Max. P | 0.998870 |
Location | 10,803,752 – 10,803,867 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -34.86 |
Consensus MFE | -30.51 |
Energy contribution | -30.71 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.88 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10803752 115 + 27905053 CAAUGCUAAUGCCUUUUGCAAGGCACUUAAAUACUUCGAUGGAGCGGCGAUUAGAGGUCCUGGCCCAUUUGCCAUUUUCCAUUCGCCAUAGCAAAUGGCCGAGAAGCGCCGCAGA ...(((...((((((....))))))........(((((((((((.(((((...(.(((....))))..)))))...))))))).(((((.....)))))...))))....))).. ( -34.90) >DroSec_CAF1 73438 115 + 1 CAAUGCUAAUGCCUUUUGCAAGGCACUUAAAUACUUCGAUGGAGCGGCGAUUAGAGGUCCUGGCACAUUUGCCGUUUUCCAUUUGCCAUAGCAAAUGGCCGAGAAGCGCCGCAGA .........((((((....))))))..................((((((......((....((((....)))).....((((((((....))))))))))......))))))... ( -37.20) >DroSim_CAF1 77688 115 + 1 CAAUGCUAAUGCCUUUUGCAAGGCACUUAAAUACUUCGAUGGAGCGGCGAUUAGAGGUCCUGGAACAUUUGCCGUUUUCCAUUUGCCAUAGCAAAUGGCCGAGAAGCGCCGCAGA ...(((...((((((....))))))........((((..(((((((((((((((.....)))).....))))))))..((((((((....))))))))))).))))....))).. ( -34.60) >DroEre_CAF1 75582 101 + 1 CAAUGCUAAUGCCUUUUGCAAGGCACUUAAAUACUUCGAUGGAGCGGCGAUUAGAGGUCCUGGCACAUUUGC--------------CAUUGCAAAUGGCCGAGAGGCGCCGCAGA ...(((...((((((....))))))...............(((.(..(.....).).))).(((.(((((((--------------....)))))))(((....))))))))).. ( -33.60) >DroYak_CAF1 77538 101 + 1 CAAUGCUAAUGCCUUUUGCAAGGCACUUAAAUACUUCGAUGGAGCGGCGAUUAGAGGUCCUGGCACAUUUGC--------------CAUUGCAAAUGGCCGAGAAGCGCCGCAGA .........((((((....))))))..................((((((........((.((((.(((((((--------------....))))))))))).))..))))))... ( -34.00) >consensus CAAUGCUAAUGCCUUUUGCAAGGCACUUAAAUACUUCGAUGGAGCGGCGAUUAGAGGUCCUGGCACAUUUGCC_UUUUCCAUU_GCCAUAGCAAAUGGCCGAGAAGCGCCGCAGA .........((((((....))))))..................((((((........((.((((.(((((((..................))))))))))).))..))))))... (-30.51 = -30.71 + 0.20)
Location | 10,803,752 – 10,803,867 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -37.58 |
Consensus MFE | -32.97 |
Energy contribution | -33.17 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.45 |
Structure conservation index | 0.88 |
SVM decision value | 3.26 |
SVM RNA-class probability | 0.998870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10803752 115 - 27905053 UCUGCGGCGCUUCUCGGCCAUUUGCUAUGGCGAAUGGAAAAUGGCAAAUGGGCCAGGACCUCUAAUCGCCGCUCCAUCGAAGUAUUUAAGUGCCUUGCAAAAGGCAUUAGCAUUG ...((((((..((..(((((((((((((..(.....)...))))))))).))))..))........))))))................((((((((....))))))))....... ( -39.60) >DroSec_CAF1 73438 115 - 1 UCUGCGGCGCUUCUCGGCCAUUUGCUAUGGCAAAUGGAAAACGGCAAAUGUGCCAGGACCUCUAAUCGCCGCUCCAUCGAAGUAUUUAAGUGCCUUGCAAAAGGCAUUAGCAUUG ...((((((......((((((((((....)))))))).....((((....))))....))......))))))................((((((((....))))))))....... ( -39.90) >DroSim_CAF1 77688 115 - 1 UCUGCGGCGCUUCUCGGCCAUUUGCUAUGGCAAAUGGAAAACGGCAAAUGUUCCAGGACCUCUAAUCGCCGCUCCAUCGAAGUAUUUAAGUGCCUUGCAAAAGGCAUUAGCAUUG ...((((((((......((((((((....)))))))).....)))....(((....)))........)))))................((((((((....))))))))....... ( -36.40) >DroEre_CAF1 75582 101 - 1 UCUGCGGCGCCUCUCGGCCAUUUGCAAUG--------------GCAAAUGUGCCAGGACCUCUAAUCGCCGCUCCAUCGAAGUAUUUAAGUGCCUUGCAAAAGGCAUUAGCAUUG ...((((((..((..((((((((((....--------------))))))).)))..))........))))))................((((((((....))))))))....... ( -36.00) >DroYak_CAF1 77538 101 - 1 UCUGCGGCGCUUCUCGGCCAUUUGCAAUG--------------GCAAAUGUGCCAGGACCUCUAAUCGCCGCUCCAUCGAAGUAUUUAAGUGCCUUGCAAAAGGCAUUAGCAUUG ...((((((..((..((((((((((....--------------))))))).)))..))........))))))................((((((((....))))))))....... ( -36.00) >consensus UCUGCGGCGCUUCUCGGCCAUUUGCUAUGGC_AAUGGAAAA_GGCAAAUGUGCCAGGACCUCUAAUCGCCGCUCCAUCGAAGUAUUUAAGUGCCUUGCAAAAGGCAUUAGCAUUG ...((((((..((..((((((((((..................))))))).)))..))........))))))................((((((((....))))))))....... (-32.97 = -33.17 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:08 2006