Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,801,624 – 10,801,725 |
Length | 101 |
Max. P | 0.852667 |
Location | 10,801,624 – 10,801,725 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -15.33 |
Consensus MFE | -13.72 |
Energy contribution | -13.76 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.40 |
Structure conservation index | 0.90 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10801624 101 + 27905053 UAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAUACUCGUAUAUCUAUAUUCAUGUGCAGGCAUACUUACAGAGUGCAAA--AUAUCUAUUUCAACUG .............((((((((.......((((.....))))..((((..((.(((....))).))..)))).....)))))))).--................ ( -16.00) >DroSec_CAF1 71289 101 + 1 CAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAAACACGUAUAUCUAUAUUUAUAUGCAGGCAUACUUACAGAGUGCAAA--AUAUCUAUUUCAACUU .............((((((((....((((((((((.....................))))))))))..........)))))))).--................ ( -15.04) >DroSim_CAF1 75543 101 + 1 CAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAUACACGUAUAUCUAUAUUCAUAUGCAGGCAUACUUACAGAGUGCAAA--AUAUCUAUUUCAACUG .............((((((((......(((((.....))))).((((..((.(((....))).))..)))).....)))))))).--................ ( -16.80) >DroEre_CAF1 73489 100 + 1 UAUUUUCACAUGAUUGCACUUAAUUCUUGUAUGUAUAAUACGCGUAUAUCUAUAUUCAUAUGCAGGCAUACUUACAGAGCGCAAAAAAUAUC---UUCAACUU .............((((.(((.......((((((.......((((((..........))))))..)))))).....))).))))........---........ ( -14.20) >DroYak_CAF1 75322 103 + 1 UAUUUCCACAUGAUUGCGCUUAAUUCUUGUAUAUAUAAUACACGUAUAUCUAUAUUCAUGUGCCAGCAUACUUACAGAGUGCAAAAAAUAUCUACUUCAACCG .............((((((((......(((((.....))))).((((((........)))))).............))))))))................... ( -14.60) >consensus UAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAUACACGUAUAUCUAUAUUCAUAUGCAGGCAUACUUACAGAGUGCAAA__AUAUCUAUUUCAACUG .............((((((((.......((((.....))))..((((((........)))))).............))))))))................... (-13.72 = -13.76 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:06 2006