Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,800,321 – 10,800,417 |
Length | 96 |
Max. P | 0.505436 |
Location | 10,800,321 – 10,800,417 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.83 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -13.80 |
Energy contribution | -15.48 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.70 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10800321 96 + 27905053 -----AAAAGCACAGAAAUGAAUACUUAAAAGAGAGAAAGAGAAGGAGAAAUUGCAAGAGAAUUGAAGAAAGCCGCACUUGCAACCAUUUGCCUUUAAGCG -----....((.((....)).....................(((((..((.(((((((.(..((.....))....).)))))))...))..)))))..)). ( -15.30) >DroSec_CAF1 69986 101 + 1 GAUGAAAUAGCACAGAAAGAAAUACUUGAAAGAGAAAAAGAGGGGGAGAAAUUGCAAGAGAAUUGGAGAAAGCCGCACUUGCAACCAUUUGCCUUUAAGCG .........((.............(((....)))....(((((.(((....(((((((.(....((......)).).)))))))...))).)))))..)). ( -20.50) >DroSim_CAF1 74241 96 + 1 GAUGAAAUAGCACAGAAAGGAAUACUUGAAAGAGAA-AAGAGGGGGAGAAAUUGCAAGAGA-UUGGAGA-AGCCGCUCUUGCA-CCAUUUGC-UUUAAGCG .........((.............(((....)))..-..((((.(((.....((((((((.-..((...-..)).))))))))-...))).)-)))..)). ( -21.00) >DroEre_CAF1 72174 101 + 1 AAUGAAAAAGCACAAAAAGGAAUACUUAGAAAAGUGAUAGAGGGGGAGAAAUUGCAAGAGAAUCGGAGAAAGCCGCACUUGCAACCAUUUGCCUUUAAGCG .........((...........(((((....))))).((((((.(((....(((((((.(...(((......)))).)))))))...))).)))))).)). ( -22.80) >DroYak_CAF1 73978 101 + 1 AAUGAAAUAGCGCAAAAUGAAAUACUUGAAAGAGAGAAAGAGGGGGAGAAAUUGCAAGAGAUUCGUAGAAAGCCGCACUUGCAGCCAUUUGCCUUUAAGCG ..........(((...........(((....)))....(((((.(((....(((((((.(....((.....))..).)))))))...))).)))))..))) ( -19.40) >consensus AAUGAAAUAGCACAGAAAGGAAUACUUGAAAGAGAGAAAGAGGGGGAGAAAUUGCAAGAGAAUUGGAGAAAGCCGCACUUGCAACCAUUUGCCUUUAAGCG .........((.............(((....)))....(((((.(((....(((((((.(...(((......)))).)))))))...))).)))))..)). (-13.80 = -15.48 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:05 2006