Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,482,754 – 1,482,848 |
Length | 94 |
Max. P | 0.574152 |
Location | 1,482,754 – 1,482,848 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -33.23 |
Consensus MFE | -25.12 |
Energy contribution | -26.07 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.14 |
Mean z-score | -1.49 |
Structure conservation index | 0.76 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1482754 94 - 27905053 GCUGGAUGCUGAUCACGAUCAACUUGACGUGGCCAGUUGCAUUUCGUCAAGCAUCGCCAAAACGG------UUGGCGAUAAGUGCGAGGAGUGCCUGGCG ((..(..((((..((((.((.....))))))..)))).(((((((.((..((((((((((.....------))))))))..))..))))))))))..)). ( -37.90) >DroSec_CAF1 1777 94 - 1 GUUGGAUGCUGAUCACGAUCAACUCGACGUGGCCAGUUGCAUUUCGUCAAGCAUCGCCAAAACUG------UUGGUGAUAAGUGCGAGGAGUGCCUGGCG ((..(..((((..((((.((.....))))))..)))).(((((((.((..((((((((((.....------))))))))..))..))))))))))..)). ( -34.10) >DroSim_CAF1 1777 94 - 1 GUUGGAUGCUGAUCACGAUCAACUCGACGUGGCCAGUUGCAUUUCGUCAAGCAUCGCCAAAACUG------UUGGUGAUAAGUGCGAGGAGUGCCUGGCG ((..(..((((..((((.((.....))))))..)))).(((((((.((..((((((((((.....------))))))))..))..))))))))))..)). ( -34.10) >DroEre_CAF1 2056 94 - 1 GCUGGACGACGAUCACGAUCACCUGGACGUGGCCAGUUGCAUUUCGUCAAGCAUCGCCAAAACGG------UUGGAGAUAAGUGCGCGGAGUGCCUGGCC .(..(..((((....)).))..)..)....((((((..(((((((((((...(((.((((.....------)))).)))...)).))))))))))))))) ( -31.80) >DroYak_CAF1 1798 88 - 1 GCUGGACGACGA------UCAUCUAGACGUGUCCAGUUGCAUUUUGUCAAACAUCGCCAAAACAG------UUGGCGAUAAGUGCGAGGAUUGCCUGGUA (((((((.(((.------((.....))))))))))))(((((((........((((((((.....------)))))))))))))))(((....))).... ( -30.40) >DroAna_CAF1 1693 100 - 1 CCUGAACGACGAUCACGAUCACCUGGACGUGGCCAGUUGCAUCUCGUCGAGCGUCGCCAAGGCAAAUGAAACUGGUGACAAUUGCGAUGCGUGCCUGGCC ........(((.(((........))).)))((((((..((((..(((((...(((((((.(..........)))))))).....))))).)))))))))) ( -31.10) >consensus GCUGGACGACGAUCACGAUCAACUCGACGUGGCCAGUUGCAUUUCGUCAAGCAUCGCCAAAACAG______UUGGUGAUAAGUGCGAGGAGUGCCUGGCG .............((((.((.....))))))(((((..((.(((((.((...((((((((...........))))))))...))))))).))..))))). (-25.12 = -26.07 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:14 2006