Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,769,414 – 10,769,515 |
Length | 101 |
Max. P | 0.699110 |
Location | 10,769,414 – 10,769,515 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 83.09 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -11.99 |
Energy contribution | -13.87 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.24 |
Mean z-score | -2.93 |
Structure conservation index | 0.58 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10769414 101 + 27905053 UCUUUAAUGAAAAGCUUUUACUUUUACUCAAUGAAAAUCGAUGAAGGCAUCUUCAUUCUUGUCUUCU-UCUUGACGAUUUUCCUUUUGUUUGUAUUUGCUCU ............(((...(((....((..((.((((((((((((((....)))))))...(((....-....)))))))))).))..))..)))...))).. ( -20.20) >DroSec_CAF1 40149 101 + 1 UUAUUAAUGAAAAGCUUUUACAUUUACUAAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU-UCUUGAGGAUUUUCCUUUUGUUUGUAUUUGCUUU ..........(((((...((((...((.(((.(((((((((.(((((((..........))))))).-)).....))))))).))).)).))))...))))) ( -22.50) >DroSim_CAF1 40726 101 + 1 UCUUUAAUGAAAAGCUUUUACAUUUACUCAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU-UCUUGACGAUUUUCCUUUUGUUUGUAUUUGCUUU ..........(((((...((((...((..((.((((((((..(((((((..........))))))).-......)))))))).))..)).))))...))))) ( -22.40) >DroEre_CAF1 41817 101 + 1 UCUUUAAAGAAAAGCUGUUACAUUUACAGAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU-UCUUGACGAUUUUCCCUUUGUUUGUAUUUCCUUU ..........((((....((((...(((((..((((((((..(((((((..........))))))).-......))))))))..))))).))))....)))) ( -21.50) >DroYak_CAF1 43243 101 + 1 UCUUUAAUGAAAAGCUUUUACAUUUACAGAAUGAAAAUCGAUGAAGGCGUCUUCAUUCUUGUCUCCG-UCCUGACGAUUUUCCUUUUGUUUGUAUUUCCUUU ..........((((....((((...((((((.((((((((((((((....)))))))...(((....-....)))))))))).)))))).))))....)))) ( -24.40) >DroAna_CAF1 43190 91 + 1 AUUUUA--GAAAAGCAUCUCUG-CUGCGGA-AAAAAAUCGAUGGUGA-AUCGUUUUUC---UCUACUAUCUU---GCUUUUUCUUUUGUUUGUAUUGGGUUU ......--((((((((......-..(..((-.(((((.((((.....-))))))))).---))..).....)---))))))).................... ( -13.92) >consensus UCUUUAAUGAAAAGCUUUUACAUUUACUGAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU_UCUUGACGAUUUUCCUUUUGUUUGUAUUUGCUUU ..........(((((...((((...((.(((.((((((((..(((((((..........)))))))........)))))))).))).)).))))...))))) (-11.99 = -13.87 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:59 2006