Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,763,445 – 10,763,539 |
Length | 94 |
Max. P | 0.500000 |
Location | 10,763,445 – 10,763,539 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 82.34 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -17.88 |
Energy contribution | -18.92 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.47 |
Structure conservation index | 0.74 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10763445 94 + 27905053 ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGGACACCUUCUCGAAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUA--------------- .(((((((((....)))))))))...............(((((((((((..(((((((((....))))))).))..)))..))))).)))....--------------- ( -25.60) >DroSec_CAF1 34220 94 + 1 ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGAACACCUUCUGGUAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUU--------------- .(((((((((....)))))))))..((((((...((((((((..........(((((((......))))))))))))))).)))))).......--------------- ( -22.80) >DroSim_CAF1 34766 94 + 1 ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGGACACCUUCUGGUAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUU--------------- .(((((((((....)))))))))...............(((((((((((..((((((((......)))))).))..)))..))))).)))....--------------- ( -23.50) >DroEre_CAF1 35558 99 + 1 ACACAAACAAGAGGUUGUUUGUGGAAGUAAGGUAGGGAUUCGCUAAGAGAACACCUUCUG----------GAUGGAUUUUAUUUGCAGAACAUUAAAUUCCCGAAGGGA .(((((((((....)))))))))...(((((...(((((((((((..((.....))..))----------).)))))))).)))))..............((....)). ( -24.50) >DroYak_CAF1 36645 106 + 1 ACACAAAUAAGAGGUUGUUUGUGGAAGUAAGGUAGGGAUUCGCUAAGAGGACACCUUCUGCAAUGGCAGGGAUGGAUUUUAUUUGCAGAGCAUUAAAUUCUUCAAG--- .(((((((((....))))))))).....(((((..(..(((.....)))..))))))((((....)))).((.((((((....(((...)))..)))))).))...--- ( -23.90) >consensus ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGGACACCUUCUGGAAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUU_______________ .(((((((((....))))))))).(((((((((..(..(((.....)))..).((((((......))))))....)))))))))......................... (-17.88 = -18.92 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:58 2006