Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,761,089 – 10,761,183 |
Length | 94 |
Max. P | 0.505761 |
Location | 10,761,089 – 10,761,183 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.90 |
Mean single sequence MFE | -22.92 |
Consensus MFE | -19.67 |
Energy contribution | -20.45 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.12 |
Mean z-score | -1.42 |
Structure conservation index | 0.86 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10761089 94 - 27905053 CA-AAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCUUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG ..-..((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ ( -26.00) >DroSec_CAF1 31836 95 - 1 CAGAAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCUUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG .....((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ ( -26.00) >DroSim_CAF1 32380 95 - 1 CAGAAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUUUGGGUUCCUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG .....((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ ( -23.00) >DroEre_CAF1 33121 94 - 1 CA-AAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCCUUGCCCGAUUCCCAGCCACAUUUGUCAUUUGAAUUAACCG ..-..((..((((.....))))..))..(((...((.((((..((.(((((.((.......))..))))).))..)))).))..)))........ ( -21.10) >DroYak_CAF1 33406 93 - 1 CA-AAGUGAACCCGAACAGAGUCAACAAUCAUUUUGC-AAAGAUGUCUGGGUUCUUUGCCCGAUUCCCGGGCACAUUUGUCAUUUGAAUUAACCG ((-((..(((((((.(((.......(((.....))).-.....))).)))))))..((((((.....)))))).........))))......... ( -24.52) >DroAna_CAF1 33443 94 - 1 CU-AAGUGAACUCUAGUAGAGUCAACAAUCAGUUUCCCAACGAUGUCUGGGCCCUGCUACCGAUUCCCUGGCGCAUUUGUCAUUUGAAUUAACCG ..-..((..((((.....))))..))...(((...((((........))))..))).....(((((..(((((....)))))...)))))..... ( -16.90) >consensus CA_AAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCUUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG .....((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ (-19.67 = -20.45 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:57 2006