Locus 3973

Sequence ID 3R_DroMel_CAF1
Location 10,756,658 – 10,756,760
Length 102
Max. P 0.783548
window6371

overview

Window 1

Location 10,756,658 – 10,756,760
Length 102
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 81.78
Mean single sequence MFE -36.30
Consensus MFE -21.35
Energy contribution -22.43
Covariance contribution 1.08
Combinations/Pair 1.14
Mean z-score -2.15
Structure conservation index 0.59
SVM decision value 0.56
SVM RNA-class probability 0.783548
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10756658 102 - 27905053
UAUGACCCUUUGGGCGGGGGCUGGCAGUGCUGUUACCCCAAAUAGGGG-G-----UGAUGGAACCGCACAAAAGGGUCGAAAUCAAGGAUGG--CGUGGGAAAACUACAA
..(((((((((..((((.(((.......)))((((((((......)))-)-----))))....))))...))))))))).............--.((((.....)))).. ( -41.10)
>DroSec_CAF1 27431 105 - 1
UAUGACCCUUUGGGCGGGGGCUGGCCGUGCUUGUACCCCAAAUAGGGG-GG--GAUGUUGGAACCGCACAAAAGGGGCGAACUCAAGGAUGG--CGUGGGAAAACUACAA
.....((((......))))....(((((.((((..((((......)))-).--...(((.(..((........))..).))).)))).))))--)((((.....)))).. ( -37.50)
>DroSim_CAF1 27898 106 - 1
UAUGACCCUUUGGGCGGGGGCUGGCCGUGCUUGUACCCCAAAUAGGGGGGG--GAUGAUGGAACCGCACAAAAGGGGCGAAAUCAAGGAUGG--CGUGGGAAAACUACAA
.....((((((..((((...(((..(((.((....((((.....)))).))--.))).)))..))))...))))))((...(((...))).)--)((((.....)))).. ( -34.40)
>DroEre_CAF1 28599 106 - 1
UAUGACCCUUUGGGC-AGGGCUGCGCGGG-AGGUACCUCAAAUAGAGG-GGGAGAGGAUAGAACCACAGAAAUGGGGGGAACUCAAGAAGGGG-CGUGGGAAACCCUACA
.....(((((((.((-(....))).)..(-((...((((.....))))-..............((.((....)).))....)))..)))))).-.(((((....))))). ( -32.80)
>DroYak_CAF1 29118 103 - 1
UGUGACCCUUUGGGCGAGGGCUGAGCGGG-AGGUACCCCAAAUUGGGG-GC-----GAUGGAACCGCAGAAAAGGGGCGAAAUCAAGAAGGGGUCGUGGGAAAACCUACA
...((((((((.(((....)))..((((.-..((.((((.....))))-..-----.))....))))....................))))))))(((((....))))). ( -35.70)
>consensus
UAUGACCCUUUGGGCGGGGGCUGGCCGUGCUGGUACCCCAAAUAGGGG_GG__GAUGAUGGAACCGCACAAAAGGGGCGAAAUCAAGGAUGG__CGUGGGAAAACUACAA
.....((((((..((((...(((............((((.....))))..........)))..))))...))))))...................((((.....)))).. (-21.35 = -22.43 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:54 2006