Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,749,528 – 10,749,621 |
Length | 93 |
Max. P | 0.602520 |
Location | 10,749,528 – 10,749,621 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 61.52 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -9.64 |
Energy contribution | -9.40 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.33 |
Mean z-score | -1.67 |
Structure conservation index | 0.43 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10749528 93 + 27905053 -----AC--------UAAGUA---------UUGCAUGGAUGGUACAGAAUAUGCUUACUUGCUUUUGACUUAGCCAUAUUUGGCUUAUAACCCGCUAUGUGGGCAGCUUUGCCAA -----.(--------((.(..---------...).))).(((((.((....(((((((..((.........(((((....)))))........))...))))))).)).))))). ( -24.93) >DroSec_CAF1 20382 83 + 1 -----AC--------UAAGUA---------CUGUAAAGGUAGUACAGAAAAAGACAA----------ACUUAGCCAUAUGUGGCCAAAAAUCCGCUAUGUGGGCAGCUUCGCCAA -----..--------...(((---------(((......))))))............----------.......(((((((((........)))).)))))(((......))).. ( -17.80) >DroSim_CAF1 20783 83 + 1 -----AC--------UAAGUA---------UUUUAAAGUUGGUACAGAAAAAGGAAA----------ACUUAGCCAUAUGUGGCCAAAAAUCCGCCAUGUGGGCAGCUUCGCCAA -----..--------......---------........(((((..((...(((....----------.))).(((.((((((((.........)))))))))))..))..))))) ( -18.50) >DroEre_CAF1 21209 112 + 1 CAGAGACCAACUUGGUAGGUACCAUUUAACUUAUAAAGGUAGUAAAGAAAAUGUGGCCU---UUUUGACACAGUCGAAUUUGGCCUAUAACCCGCUAUGUGGCCAGUUUCACCAA ..(((((..((.(((..((((((.((((.....)))))))...........(((((((.---.((((((...))))))...)))).))))))..))).)).....)))))..... ( -26.80) >DroYak_CAF1 21714 85 + 1 UCCAUACC---------------------------AACGUGGCAGGUACCAUGUGAUCU---UUUCGACAUAGCCAAAUUUGGCCAAUAACCCGCCAUGUGGCCAGUUUCGCCAA ........---------------------------.(((((((.(((...((((((...---..)).)))).((((....)))).....))).)))))))(((.......))).. ( -25.30) >consensus _____AC________UAAGUA_________UUGUAAAGGUGGUACAGAAAAUGUGAACU___UUU_GACUUAGCCAUAUUUGGCCAAUAACCCGCUAUGUGGGCAGCUUCGCCAA .......................................((((.............................((((....)))).......((((...))))........)))). ( -9.64 = -9.40 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:52 2006