Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,744,648 – 10,744,760 |
Length | 112 |
Max. P | 0.567089 |
Location | 10,744,648 – 10,744,760 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -36.67 |
Consensus MFE | -22.15 |
Energy contribution | -23.65 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.19 |
Mean z-score | -1.70 |
Structure conservation index | 0.60 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10744648 112 - 27905053 CGCAGGUCCGCAAUCUUAUUUAUCUCCAACGAUCCGCAGGCGGUUUGAUCAUCGGAACUGGCCAAAACCGGCGAU---GAGGCGCCCAAAAACAGCAGUAUCAACGGAACUGCGA (((((.(((((..................(((.(((....))).))).((((((...((((......))))))))---)).))((.........)).........))).))))). ( -31.70) >DroSec_CAF1 15514 112 - 1 CGCAGUUCCGCAAUCUCAUUUAUUUCCAGCGAUCCGCAGGCGGUUUGGUCAUCGGAUCUGGCCGAAACCGGCGAU---GCGUCGCCCAAAAACAGCAAUAACAGCGGAACUGCGA (((((((((((.................(((...)))..((((((((((((.......))))).)))))(((((.---...)))))........)).......))))))))))). ( -46.40) >DroSim_CAF1 15925 112 - 1 CGCAGGUCCGCAAUCUCAUUUAUCUCCAGCGAUCCGCAGGCGGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGCU---GCGGCGCCCAAAAACAGCAAUAACAGCGGAACUGUGA (((((.(((((.................(((..((((((((((((((((((.......))))).))))).)).))---))))))).........(......).))))).))))). ( -42.70) >DroEre_CAF1 16165 112 - 1 CGCAAGUCCGCAAUCUCAUUUAUCUCCAGCGAUUCGCAGGCGGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGAU---GCGGCACCCAAAAACAGAAAUAACAGCGGAACUGCGA ((((..(((((..........(((......)))((((((.(((((((((((.......))))).)))))).)..)---)))).....................)))))..)))). ( -35.90) >DroYak_CAF1 16580 112 - 1 CGCAAGUCCGCAAUCUCAUUUAUCUCCUGCGAUCCGCAGACUGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGAU---GCGGCGCCCAAAAACAGAAAUAACAGCGGAACUGCGA ((((..(((((...............(((((...))))).((((((((.(..((.(((..(((......))))))---.))..).)))..)))))........)))))..)))). ( -39.70) >DroAna_CAF1 15137 104 - 1 CGAAAGUCCCCGAUAUCAUUGAUCUCCAGCGAUCCGCAAGCCGGUCCAUUUUCGGAUCUGACCAAAAGGGGGCACAGAGCGAGAGUAAGACACAGAAACAGCCG----------- .....((((((.........((((......))))........(((((......))))).........)))))).....((....))..................----------- ( -23.60) >consensus CGCAAGUCCGCAAUCUCAUUUAUCUCCAGCGAUCCGCAGGCGGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGAU___GCGGCGCCCAAAAACAGAAAUAACAGCGGAACUGCGA ((((..(((((...................((((((..(((......)))..))))))..(((......)))...............................)))))..)))). (-22.15 = -23.65 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:51 2006