Locus 397

Sequence ID 3R_DroMel_CAF1
Location 1,477,473 – 1,477,572
Length 99
Max. P 0.538812
window653

overview

Window 3

Location 1,477,473 – 1,477,572
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 88.76
Mean single sequence MFE -38.05
Consensus MFE -29.04
Energy contribution -29.85
Covariance contribution 0.81
Combinations/Pair 1.11
Mean z-score -2.61
Structure conservation index 0.76
SVM decision value 0.01
SVM RNA-class probability 0.538812
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1477473 99 - 27905053
AAGAUCAAU--CAAAUGUGGCCAGUUGAUGGCGCUGGCUGCGAGACUCACCUGCCCGUAGGCGUACAUGUUGUUGUGCGUCUGCGAGGGAUUGACCUUGGA
(((.(((((--(...((..((((((.......))))))..))...........((((((((((((((......)))))))))))).)))))))).)))... ( -44.30)
>DroSec_CAF1 11245 99 - 1
AAGAUCAAU--CAAAUGUUGCCAGUUGAUGGCACUGGCUGCGAGACUCACCUGCCCGUAGGCGUACAUGUUGUUGUGCGUCUGCGAGGGAUUGACCUUGGA
(((.(((((--(...(((.((((((.......)))))).)))...........((((((((((((((......)))))))))))).)))))))).)))... ( -41.00)
>DroSim_CAF1 11697 99 - 1
AAGAUCAAU--CAAAUGUUGCCAGUUGAUGGCACUGGCUGCGAGACUCACCUGCCCGUAGGCGUACAUGUUGUUGUGCGUCUGCGAGGGAUUGACCUUGGA
(((.(((((--(...(((.((((((.......)))))).)))...........((((((((((((((......)))))))))))).)))))))).)))... ( -41.00)
>DroEre_CAF1 12521 99 - 1
AAGAUAAAU--AAACUGUGGCCAGUUGAUGGCGCCUGCUACGAGACUCACCUGCCCGUAGGCGUACAUGUUGUUGUGCGUCUGCGAGGGGUUAACCUUGGA
.........--........((((.....))))........((((....(((..((((((((((((((......)))))))))))).)))))....)))).. ( -33.00)
>DroYak_CAF1 11000 99 - 1
AAGAUCAAA--CAAAUGUGGCCAAUUGCUGGCCAUUGCUACGAGACUCACCUGCCCGUAGGCGUACAUGUUGUUGUGCGUCUGCGAGGGGUUGACCUUGGA
.........--.....(((((((.....))))))).....((((..(((((..((((((((((((((......)))))))))))).)))).))).)))).. ( -38.00)
>DroAna_CAF1 10671 101 - 1
AAGAUCAAUAGAAAAUGUGGCAAGCUUUGGGCUUUAACCAUGGAACUUACCUGCCCGUAGGCGUACAUGUUGUUGUGCGUCUGCGAGGGAUUAACCUUGGA
..((((..........((((.((((.....))))...))))............((((((((((((((......)))))))))))).))))))......... ( -31.00)
>consensus
AAGAUCAAU__CAAAUGUGGCCAGUUGAUGGCACUGGCUACGAGACUCACCUGCCCGUAGGCGUACAUGUUGUUGUGCGUCUGCGAGGGAUUGACCUUGGA
(((.(((((.........(((((.....)))))................(((...((((((((((((......)))))))))))).)))))))).)))... (-29.04 = -29.85 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:13 2006