Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,728,289 – 10,728,390 |
Length | 101 |
Max. P | 0.983796 |
Location | 10,728,289 – 10,728,390 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.43 |
Mean single sequence MFE | -33.85 |
Consensus MFE | -24.23 |
Energy contribution | -23.82 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.20 |
Mean z-score | -3.63 |
Structure conservation index | 0.72 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10728289 101 + 27905053 GA---AAUAAACAAAUCACGGUCGUUUUCACACCGUGCACACUCCACAGUCGAUUGAG---UGAUGCUGGUGACUGC--GAGCGUGCGAGGCGUGAAAACCAACUGCCA ..---.............((((.((((((((.((.(((((.(((..((((((....((---.....))..)))))).--))).))))).)).))))))))..))))... ( -35.20) >DroPse_CAF1 3907 106 + 1 UA---CAUAAACAAAUCUUUGUCAUUUUUACACCAUGCACACUCAGCAAUCAAUUGAAAUUGGAUGCUGAUAAUUGCGCGAGUAGGCGUGGCGUAAAAAUAAACAUCUA ..---..............(((.((((((((.((((((....((((((.(((((....))))).))))))...((((....)))))))))).))))))))..))).... ( -32.80) >DroEre_CAF1 4192 101 + 1 GA---AAUAAACAAAUCGCCGCCGUUUUCACACCAUGCACACUCCACAGUCGAUUGAG---UGAUGCUGGUGACUGC--AAGUGUGCGAGGCGUGAAAACCAACUGCCA ..---............((.(..((((((((.((.((((((((...((.((....)).---)).(((.(....).))--))))))))).)).))))))))...).)).. ( -34.30) >DroYak_CAF1 3885 101 + 1 UA---AAUAAACAAAUCGCCGUCGUUUUCACACCGUGCACACUCCACAGUCGAUUGAG---UGAUGCUGGUGACUGC--AAGUGUGCGAGGCGUGAAAACCAACUGCCA ..---............((.((.((((((((.((.((((((((...((.((....)).---)).(((.(....).))--))))))))).)).))))))))..)).)).. ( -35.80) >DroAna_CAF1 4859 106 + 1 AUUAUAAAAAACAAAACUCAGUCGUUUUCACAUCGGGCACACUCUGCAAUCGAUUGAG---UGAUGCUGGUGAUUGCUAAAGUGUGCGAGGCGUGAAAACUAACAGCUU .......................((((((((..(..(((((((..(((((((....((---.....))..)))))))...)))))))..)..))))))))......... ( -32.20) >DroPer_CAF1 3931 106 + 1 UA---CAUAAACAAAUCUUUGUCAUUUUUACACCAUGCACACUCAGCAAUCAAUUGAAAUUGGAUGCUGAUAAUUGCGCGAGUAGGCGUGGCGUAAAAAUAAACAUCUA ..---..............(((.((((((((.((((((....((((((.(((((....))))).))))))...((((....)))))))))).))))))))..))).... ( -32.80) >consensus UA___AAUAAACAAAUCUCCGUCGUUUUCACACCAUGCACACUCCACAAUCGAUUGAG___UGAUGCUGGUGACUGC__AAGUGUGCGAGGCGUGAAAACCAACAGCCA .......................((((((((.((.((((((((...((((((...(..........)...))))))....)))))))).)).))))))))......... (-24.23 = -23.82 + -0.41)
Location | 10,728,289 – 10,728,390 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.43 |
Mean single sequence MFE | -36.75 |
Consensus MFE | -32.99 |
Energy contribution | -30.88 |
Covariance contribution | -2.11 |
Combinations/Pair | 1.32 |
Mean z-score | -3.89 |
Structure conservation index | 0.90 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10728289 101 - 27905053 UGGCAGUUGGUUUUCACGCCUCGCACGCUC--GCAGUCACCAGCAUCA---CUCAAUCGACUGUGGAGUGUGCACGGUGUGAAAACGACCGUGAUUUGUUUAUU---UC ..((.((((.((((((((((..((((((((--((((((..........---.......)))))).))))))))..)))))))))))))).))............---.. ( -40.33) >DroPse_CAF1 3907 106 - 1 UAGAUGUUUAUUUUUACGCCACGCCUACUCGCGCAAUUAUCAGCAUCCAAUUUCAAUUGAUUGCUGAGUGUGCAUGGUGUAAAAAUGACAAAGAUUUGUUUAUG---UA ....((((.((((((((((((.((......))(((....((((((..((((....))))..))))))...))).))))))))))))))))..............---.. ( -33.30) >DroEre_CAF1 4192 101 - 1 UGGCAGUUGGUUUUCACGCCUCGCACACUU--GCAGUCACCAGCAUCA---CUCAAUCGACUGUGGAGUGUGCAUGGUGUGAAAACGGCGGCGAUUUGUUUAUU---UC ..((.((((.((((((((((..(((((((.--.(((((..........---.......)))))..).))))))..)))))))))))))).))............---.. ( -40.73) >DroYak_CAF1 3885 101 - 1 UGGCAGUUGGUUUUCACGCCUCGCACACUU--GCAGUCACCAGCAUCA---CUCAAUCGACUGUGGAGUGUGCACGGUGUGAAAACGACGGCGAUUUGUUUAUU---UA ..((.((((.((((((((((..(((((((.--.(((((..........---.......)))))..).))))))..)))))))))))))).))............---.. ( -40.33) >DroAna_CAF1 4859 106 - 1 AAGCUGUUAGUUUUCACGCCUCGCACACUUUAGCAAUCACCAGCAUCA---CUCAAUCGAUUGCAGAGUGUGCCCGAUGUGAAAACGACUGAGUUUUGUUUUUUAUAAU ((((((((.(((((((((.(..(((((((((.((((((..........---.......)))))))))))))))..).))))))))))))..)))))............. ( -32.53) >DroPer_CAF1 3931 106 - 1 UAGAUGUUUAUUUUUACGCCACGCCUACUCGCGCAAUUAUCAGCAUCCAAUUUCAAUUGAUUGCUGAGUGUGCAUGGUGUAAAAAUGACAAAGAUUUGUUUAUG---UA ....((((.((((((((((((.((......))(((....((((((..((((....))))..))))))...))).))))))))))))))))..............---.. ( -33.30) >consensus UAGCAGUUGGUUUUCACGCCUCGCACACUC__GCAAUCACCAGCAUCA___CUCAAUCGACUGCGGAGUGUGCACGGUGUGAAAACGACAGAGAUUUGUUUAUU___UA .....(((.(((((((((((..((((((((..((((((....................)))))).))))))))..)))))))))))))).................... (-32.99 = -30.88 + -2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:47 2006