Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,726,997 – 10,727,105 |
Length | 108 |
Max. P | 0.714718 |
Location | 10,726,997 – 10,727,105 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -37.58 |
Consensus MFE | -22.10 |
Energy contribution | -21.58 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.39 |
Mean z-score | -1.81 |
Structure conservation index | 0.59 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10726997 108 - 27905053 UGCCGGCCCAGG---AGGUCACCGAGUGGCCGGAAAUCAAGCUUUUCGGGCGCUGGGCCUGCGACGACAUCUCCAUCAGCGACAUCUCGCUGCAGGACUACAUUGCCGUAA .((.(((((.((---......)).((((.(((((((......))))))).))))))))).)).(((.((..(((..((((((....))))))..)))......)).))).. ( -42.70) >DroPse_CAF1 2622 108 - 1 UAACCUAUCAGC---AAGCCAAUGAGUGGCCUGAAAUCAAGCUUUUCGGCCGCUGGGCCUGCGAUGACAUAUCCAUAGGUGAUAUUUCGUUGCAAGACUACAUUGCCGUGA ..........((---(((((....(((((((.((((.......))))))))))).))).((((((((.((((((....).))))).))))))))........))))..... ( -35.50) >DroEre_CAF1 2928 108 - 1 UGCCCGCCCAGC---AGGCCACCGAGUGGCCGGAAAUCAAGCUCUUUGGUCGCUGGGCCUGCGACGACAUCUCCAUUAGCGACAUCUCGCUGCAGGACUACAUCGCCGUGA .....(((((((---.((((((...))))))....((((((...)))))).)))))))..(((.(((....(((..((((((....))))))..))).....))).))).. ( -41.50) >DroMoj_CAF1 3106 108 - 1 U---CGACCAGCCAGCCAUCAAUGAGUGGCCCGAAAUUAAGAUAUUCGGCCGCUGGAGCUGCGAUGAAAUUACAAUUAGUGACAUUUCGCUGCAAGAUUACAUCGCUGUCA .---...(((((..(((((......)))))(((((.........)))))..))))).((.((((((.((((.....((((((....))))))...)))).)))))).)).. ( -33.50) >DroAna_CAF1 3754 108 - 1 UACCGGCCCAAC---AAGCCAACGAAUGGCCGGAGAUUAAGCUUUUUGGUCGUUGGGGCUGCGAUGAUAUUUCCAUCAGCGACAUUUCGCUGCAGGACUACAUUGCCGUGA ....(.((((((---..((((.....))))....(((((((...))))))))))))).).((((((.((..(((..((((((....))))))..))).))))))))..... ( -36.80) >DroPer_CAF1 2621 108 - 1 UAGCCUAUCAGC---AAGCCAAUGAGUGGCCUGAAAUCAAGCUUUUCGGCCGCUGGGCCUGCGAUGACAUAUCCAUAGGUGAUAUUUCGUUGCAAGACUACAUUGCCGUGA ..........((---(((((....(((((((.((((.......))))))))))).))).((((((((.((((((....).))))).))))))))........))))..... ( -35.50) >consensus UACCCGACCAGC___AAGCCAACGAGUGGCCGGAAAUCAAGCUUUUCGGCCGCUGGGCCUGCGAUGACAUAUCCAUAAGCGACAUUUCGCUGCAAGACUACAUUGCCGUGA .................(((....(((((((.((((.......))))))))))).)))..((((((.....((...((((((....))))))...))...))))))..... (-22.10 = -21.58 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:45 2006