Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,722,771 – 10,722,931 |
Length | 160 |
Max. P | 0.969583 |
Location | 10,722,771 – 10,722,891 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -24.60 |
Energy contribution | -24.80 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.90 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10722771 120 - 27905053 UGCAGAUCGCAAUGCCGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACUCCACCGAUGCCUAUAAGAAGGCCGUUUACUGCAUCCUUUU (((((...((...(((((((.......(((.......))).....(((((....))))).))))......(((.(((.(......).))).))).....))).))...)))))....... ( -26.00) >DroSec_CAF1 10505 120 - 1 UGCAGAUCGCAAUGCGGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGAUUGCAGUACGCCAACAAAAUACGCAACUCCACCGAUGCCUAUAAGAAGGCUGUUUACUGCAUCCUUUU (((((...(((.((((((((.......(((.......))).....(((((....))))).)))).........))))...........((((......)))))))...)))))....... ( -27.20) >DroSim_CAF1 10495 120 - 1 UGCAGAUCGCAAUGCGGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGUAACUCCACCGAUGCCUAUAAGAAGGCUGUUUACUGCAUCCUUUU (((((((((...((..((((.......(((.......))).....(((((....))))).))))..))......((......))))))((((......))))......)))))....... ( -27.00) >DroEre_CAF1 11887 120 - 1 UGCAGAUCGAAAUGCGGGCGAAACCAAUUCGAGAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACUCCACCGAUGCCUAUAAGAAGGCUGUUUACUGCAUCCUUUU (((((((((...((((((((.......(((.......))).....(((((....))))).)))).........)))).......))))((((......))))......)))))....... ( -28.40) >DroYak_CAF1 10423 120 - 1 UGCAGAUAGAAAUGCGGGCGAAACCAAUUCCAGAAUUGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACUCCACCGAUGCCUAUAAGAAAGCUGUUUACUGCAUCCUUUU (((((.((((...((.((((....(((((....))))).......(((((....))))).))))......(((.(((.(......).))).)))......))..)))))))))....... ( -28.70) >consensus UGCAGAUCGCAAUGCGGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACUCCACCGAUGCCUAUAAGAAGGCUGUUUACUGCAUCCUUUU (((((.......((..((((.......(((.......))).....(((((....))))).))))..))....................((((......))))......)))))....... (-24.60 = -24.80 + 0.20)
Location | 10,722,811 – 10,722,931 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -31.10 |
Energy contribution | -30.62 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.59 |
Structure conservation index | 0.92 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10722811 120 - 27905053 GCGAAGCGGGCAGUAGCCACGAUGAGUUUGCCCAGCUCGUUGCAGAUCGCAAUGCCGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACU (((..((((((....))).(((((((((.....))))))))).....)))......((((.......(((.......))).....(((((....))))).)))).........))).... ( -34.70) >DroSec_CAF1 10545 120 - 1 GCGAAGCCGGCAGUAGCCACGAUGAGUUUGCCCAGCUCGUUGCAGAUCGCAAUGCGGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGAUUGCAGUACGCCAACAAAAUACGCAACU (((..((.(((....))).(((((((((.....)))))))))......))..((..((((.......(((.......))).....(((((....))))).))))..)).....))).... ( -33.70) >DroSim_CAF1 10535 120 - 1 GCGAAGCCGGCAGUAGCCACGAUGAGUUUGCCCAGCUCGUUGCAGAUCGCAAUGCGGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGUAACU ((((....(((....))).(((((((((.....)))))))))....))))..((..((((.......(((.......))).....(((((....))))).))))..))............ ( -33.30) >DroEre_CAF1 11927 120 - 1 GCGAAGCGGGCAGUAGCCACGAUGAGUUUGCCCAGCUUGUUGCAGAUCGAAAUGCGGGCGAAACCAAUUCGAGAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACU (((((((((((((...(......)...)))))).))))((((((........))).((((.......(((.......))).....(((((....))))).)))))))......))).... ( -34.50) >DroYak_CAF1 10463 120 - 1 GUGAAGCUGGCAGUAGCCACGAUGAGUUUGCCCAGCUCGUUGCAGAUAGAAAUGCGGGCGAAACCAAUUCCAGAAUUGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACU (((..((((((....))))(((((((((.....)))))))))...........)).((((....(((((....))))).......(((((....))))).)))).........))).... ( -33.40) >consensus GCGAAGCCGGCAGUAGCCACGAUGAGUUUGCCCAGCUCGUUGCAGAUCGCAAUGCGGGCGAAACCAAUUCCAAAAUAGAAAACCAACUGCGACUGCAGUACGCCAACAAAAUACGCAACU (((..((.(((....))).(((((((((.....)))))))))...........)).((((.......(((.......))).....(((((....))))).)))).........))).... (-31.10 = -30.62 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:43 2006