| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,716,915 – 10,717,032 |
| Length | 117 |
| Max. P | 0.571816 |
| Location | 10,716,915 – 10,717,032 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.92 |
| Mean single sequence MFE | -36.07 |
| Consensus MFE | -23.12 |
| Energy contribution | -22.98 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.571816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10716915 117 + 27905053 GCAACCUGCAGGAGGUGGUCUUCGAUCACCUUCACGCCACCGCCUAUCAGGGCACUCCUCUGGGCCAGACCAUCCUGGGACCCACCAAGAACAUUCAGUACGUAUAUUCAGC---UCUUA .......((.((((((((((...))))))))))(((.....((((....)))).......((((((((......))))..))))................))).......))---..... ( -32.60) >DroVir_CAF1 4393 119 + 1 GCAAUUUGCAGGAGGUGGUCUUUGAUCACUUGCACGCUACCGCUUACCAGGGCACUCCCUUGGGCCAGACCAUUCUCGGCCCUACCAAGAACAUUCAGUGAGUGGAAAUUAGUUGUUUU- ((((((.((.(.((((((((...)))))))).)..))..((((((((.((((....)))).((((((((....))).)))))...............)))))))).....))))))...- ( -39.50) >DroGri_CAF1 4496 120 + 1 GCAAUCUGCAGGAAGUGGUCUUCGAUCACUUGCACGCCACUGCCUAUCAGGGCACACCCUUGGGUCAGACCAUUCUUGGUCCCACCAAGAACAUUCAGUGAGUAUCAAAAGCAGGAAGUA ((..(((((.(.((((((((...)))))))).)..((((((((((....)))).....(((((....(((((....)))))...))))).......)))).)).......)))))..)). ( -40.80) >DroMoj_CAF1 4602 119 + 1 GCAAUCUGCAGGAGGUGGUCUUCGAUCACUUGCACGCUACUGCCUAUCAGGGCACUCCUUUGGGCCAGACGAUUCUUGGCCCCACCAAGAACAUUCAGUAAGUAGAAUAUGUUUGAUGU- ....((((((((((((((((...))))))...........(((((....))))))))))..((((((((....)).))))))...................))))).............- ( -35.40) >DroAna_CAF1 4663 112 + 1 GCAACUUGCAGGAGGUGGUUUUCGAUCACCUGCACGCCACUGCCUACCAGGGCACUCCCCUUGGCCAGACCAUCCUUGGCCCCACCAAGAACAUUCAGUACGUACU-GCGGA---U---- .....((((((.((((((((...))))))))..(((..((((.((.((((((......))))))..))......(((((.....)))))......)))).))).))-)))).---.---- ( -33.30) >DroPer_CAF1 4521 115 + 1 GCAACCUCCAGGAGGUGGUGUUCGAUCACUUGCAUGCCACCGCCUACCAGGGCACCCCGUUGGGUCAGACCAUCCUUGGCCCCACCAAGAACAUUCAGUGCGUAUUAGAA-----AAAUA ((..(((..(((.((((((((.(((....))).)))))))).)))...)))((((...((.(((((((.......))))))).))...((....)).)))))).......-----..... ( -34.80) >consensus GCAACCUGCAGGAGGUGGUCUUCGAUCACUUGCACGCCACCGCCUACCAGGGCACUCCCUUGGGCCAGACCAUCCUUGGCCCCACCAAGAACAUUCAGUAAGUAUAAAAAGC___AAGU_ ((.....)).(.((((((((...)))))))).)..(((((.((((....))))........(((((((......)).)))))...............))).))................. (-23.12 = -22.98 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:32 2006