Locus 3959

Sequence ID 3R_DroMel_CAF1
Location 10,709,049 – 10,709,148
Length 99
Max. P 0.586527
window6346

overview

Window 6

Location 10,709,049 – 10,709,148
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 78.05
Mean single sequence MFE -31.47
Consensus MFE -18.40
Energy contribution -19.43
Covariance contribution 1.03
Combinations/Pair 1.28
Mean z-score -1.56
Structure conservation index 0.58
SVM decision value 0.11
SVM RNA-class probability 0.586527
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10709049 99 + 27905053
CCUUCAGCGGGACGGAGUACAUGUCAUCAUCCUCCUUUCCGAU-GGCGUGUGCCUCCAGCUUAAUGUUUUGCUCCACAGUUGGGGCUGCUGGACACAAUU
..(((((((((..(((((((((((((((............)))-)))))))).))))..)))........((((((....)))))).))))))....... ( -37.40)
>DroSec_CAF1 2779 99 + 1
CCUUCAGCGGAACGGAGUACAUGUCAUCAUCCUCCUUCCCGAU-GGCGUUUGCCUCCAGCUUAAUGUUUUGCUCCACAGUUGGGGCCGCUGGACACAAUU
..(((((((....((((((.((((((((............)))-))))).)).)))).............((((((....)))))))))))))....... ( -32.70)
>DroSim_CAF1 4064 99 + 1
CCUUCAGCGGAACGGAGUACAUGUCAUCAUCCUCCUUCCCGAU-GGCGUUUGCCUCCAGCUUAAUGUUUUGCUCCACAGUUGGGGCCGCUGGACACAAUU
..(((((((....((((((.((((((((............)))-))))).)).)))).............((((((....)))))))))))))....... ( -32.70)
>DroEre_CAF1 2914 99 + 1
CCUUCAGCGGCACGGAGUAAACGACAUCGUCCUCCUUCUUGCU-GACAUGCGCCUCCAGCUUGAUGUUUUGCUCCACAGUUGGGGCCGCUAGACACAAUU
...(((((((...((((...(((....))).))))...)))))-))...(((.((((((((((..(.....)..)).)))))))).)))........... ( -31.20)
>DroYak_CAF1 4100 99 + 1
CCUUCAGCGGCACGGAGUACACGACAUCUUCCUCCUUUUUGAU-GGCAUGUGCCUCCAGCUUAAUGUUUUGCUCCACAGUUGGGGCCGUUGGACACAAUU
..(((((((((..((((((((.(.((((............)))-).).)))).))))..((((((((........))).))))))))))))))....... ( -29.60)
>DroMoj_CAF1 3795 93 + 1
CUUUCAGUGGUAGACUCUGUACGGGAUCCUCUUCCACCUU---UGGCU-CGAUUUCCAGCUUGAUGUC---CACCGGCGCUGGUUCGGCGGGGCACAGAC
......((((.((((((.....)))....))).))))((.---((.((-((....((((((((.....---...))).))))).....)))).)).)).. ( -25.20)
>consensus
CCUUCAGCGGAACGGAGUACACGUCAUCAUCCUCCUUCCCGAU_GGCGUGUGCCUCCAGCUUAAUGUUUUGCUCCACAGUUGGGGCCGCUGGACACAAUU
..((((((((...((((...(((....))).))))..................((((((((...((........)).))))))))))))))))....... (-18.40 = -19.43 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:29 2006