Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,708,415 – 10,708,509 |
Length | 94 |
Max. P | 0.596886 |
Location | 10,708,415 – 10,708,509 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 84.66 |
Mean single sequence MFE | -15.27 |
Consensus MFE | -13.11 |
Energy contribution | -12.31 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.22 |
Mean z-score | -1.50 |
Structure conservation index | 0.86 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10708415 94 - 27905053 GAACAACAAGCAGUUCAACAAGCUUUUUACAUUUAGUAAUGUAAGAAAAGAGGGCAAAAAAUGAACUGCAAUCGUGACGAAGUCUGUAAAAUAU--- ..(((((..((((((((....((((((((((((....)))))))))......)))......))))))))..(((...))).)).))).......--- ( -19.70) >DroPse_CAF1 2001 93 - 1 GAAUAACAAGCAGUUUAACAAGCUUUUUACAUUCAGUAAUGUAAAGAAAGAUGGCAAGAAAUAGACUGUGC----UAAAAACACCAUAAAAUACAUA .........((((((((....((((((((((((....)))))))))......)))......))))))))..----...................... ( -12.90) >DroSec_CAF1 2119 94 - 1 CAACAACAAGCAGUUCAACAAGCUUUUUACAUUCAGUAAUGUAAGGAAAGAGGGCAAAAAAUAAACUGCAAUCGUGACGAAGUCUGUAAAAUAU--- .........((((........((((((((((((....))))))))))..((..(((..........)))..))))........)))).......--- ( -14.39) >DroSim_CAF1 3407 94 - 1 CAACAACAAGCAGUUCAACAAGCUUUUUACAUUUAGUAAUGUAAGGAAAGAGGGCAAAAAAUAAACUGCAAUCGUGACGAAGUCUGUAAAAUAU--- .........((((........((((((((((((....))))))))))..((..(((..........)))..))))........)))).......--- ( -15.19) >DroYak_CAF1 3455 94 - 1 CAACAACAAGCAGUUCAACAAGCUUUUUACAUUUAGUAAUGUAAGGAAAGAAGGCAAAAAAUAAACUGCAAUCGUGACGAAGUCUGUUAAAUAU--- .((((((..((((((......((((((((((((....))))))......))))))........))))))..(((...))).)).))))......--- ( -15.74) >DroPer_CAF1 2011 90 - 1 GAAUAACAAGCAGUUUAACAAGCUUUUUACAUUUAGUAAUGUAAAGAAAGAUGGCAAGAAAUAGACUGUGC----UAAAAACACCAUAAAAUAC--- .........((((((((....((((((((((((....)))))))))......)))......))))))))..----...................--- ( -13.70) >consensus CAACAACAAGCAGUUCAACAAGCUUUUUACAUUUAGUAAUGUAAGGAAAGAGGGCAAAAAAUAAACUGCAAUCGUGACGAAGUCUGUAAAAUAU___ .........((((((......((((((((((((....)))))))))......)))........))))))............................ (-13.11 = -12.31 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:28 2006