Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,701,137 – 10,701,232 |
Length | 95 |
Max. P | 0.979844 |
Location | 10,701,137 – 10,701,232 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -30.66 |
Consensus MFE | -29.28 |
Energy contribution | -29.52 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.52 |
Structure conservation index | 0.95 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10701137 95 + 27905053 UCGAGCCGAAAACGUGGGAAAACGCGGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGCAGCAGC--- ....((((....(((((((((((((((((.....))).)))))).))))))))..............(((....))).....)))).........--- ( -33.80) >DroSec_CAF1 42527 92 + 1 UCGAGCCGAAAACGUGGGAAAACGCAGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGC---AGC--- ....((((....(((((((((((((.(((.....)))..))))).))))))))..............(((....))).....))))...---...--- ( -31.30) >DroSim_CAF1 45726 92 + 1 UCGAGCCGAAAACGUGGGAAAACGCAGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGC---AGC--- ....((((....(((((((((((((.(((.....)))..))))).))))))))..............(((....))).....))))...---...--- ( -31.30) >DroEre_CAF1 39786 92 + 1 UCGAGCCGAAAACGUGGGGAAACGCAGUCAGGAACGCGCGCGUUGUUCUCGCGCCAACAGCAAUCCAGGCACUGGCCAAAAACGGCAGC---AGC--- ....((((.....((((((((((((.((.......))..))))).)))))))((((...((.......))..))))......))))...---...--- ( -28.20) >DroYak_CAF1 34988 95 + 1 UCGAGCCGAAAACGUGGGAAAACGCAGUCAAGAACGCGCGCGUUGUUCUCGCGCCAACAGCAAUCCAGGCACUGGCCAAAAACGGCAGC---AGCAGC ....((((.....((((((((((((.((.......))..))))).)))))))((((...((.......))..))))......))))...---...... ( -28.70) >consensus UCGAGCCGAAAACGUGGGAAAACGCAGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGC___AGC___ ....((((....(((((((((((((.(((.....)))..))))).))))))))..............(((....))).....))))............ (-29.28 = -29.52 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:25 2006