Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,693,253 – 10,693,359 |
Length | 106 |
Max. P | 0.534136 |
Location | 10,693,253 – 10,693,359 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -27.69 |
Consensus MFE | -21.76 |
Energy contribution | -23.54 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.12 |
Mean z-score | -2.13 |
Structure conservation index | 0.79 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10693253 106 - 27905053 G-GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU-UGGCCAU (-....)((((((...((((((((((.........(((((((((...........)))))))))......)))))).)))))))))).............-....... ( -31.36) >DroSec_CAF1 34599 106 - 1 G-GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUUGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU-UGGUCAU .-..(((((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))....((.......-))))).. ( -30.16) >DroSim_CAF1 36622 106 - 1 G-GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU-UGGUCAU .-..(((((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))....((.......-))))).. ( -32.56) >DroEre_CAF1 32074 105 - 1 GA--GACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCCCAAAUUCAGGGCAAAUAAUUUUUGGGCGCGCACAGCACACUUCACAUUCAUCU-UGUUCAU ..--((.((((((...((((((...(((((.....(((((((((...........)))))))))....))))).)).)))))))))).))..........-....... ( -27.70) >DroYak_CAF1 27054 108 - 1 GAGAGACGUGUGCAUUUGUGGCUUCUUCAACUCAAUAUUUGCUCGCCCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCUUUGUUCAU .......((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))..................... ( -29.86) >DroAna_CAF1 10750 94 - 1 A--AGACGUGUGCAUUUGUGGCUUUGCCAAUUCAAUAUUUACUUGCA-AAACCGACAGCAAAUAAUUUUCG----------GCAUACUAUACAUUCAUCU-UGAUCAU .--....((((((.....((((...)))).........(((.((((.-.........)))).)))......----------)))))).............-....... ( -14.50) >consensus G_GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU_UGGUCAU .......((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))..................... (-21.76 = -23.54 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:20 2006