Locus 3952

Sequence ID 3R_DroMel_CAF1
Location 10,682,850 – 10,682,958
Length 108
Max. P 0.939680
window6335

overview

Window 5

Location 10,682,850 – 10,682,958
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 93.46
Mean single sequence MFE -31.25
Consensus MFE -28.85
Energy contribution -28.97
Covariance contribution 0.11
Combinations/Pair 1.11
Mean z-score -1.46
Structure conservation index 0.92
SVM decision value 1.28
SVM RNA-class probability 0.939680
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10682850 108 + 27905053
GUUGCCGGCGGAAGGGAUUUAUGUGUUUAGAUUACUUGAGCCGGCAAGGCCAAUGGAACCGCUUAUAUGUUUAUAUGAUGGCCGCAACAAAACCGUCAUUAAAGUGUA
.((((((((..(((..(((((......)))))..)))..))))))))(((((..(....)..((((((....)))))))))))......................... ( -32.40)
>DroSec_CAF1 23970 108 + 1
GUUGCCGGCGGAAGGGAUUUAUGUGUUUAGAUUACUUGAGCCGGCAAGGCCAAUGGAACCGCUUAUAUGUUUAUAUGAUGGCCGCAACAAAACCGUCAUUAAAGUGUA
.((((((((..(((..(((((......)))))..)))..))))))))(((((..(....)..((((((....)))))))))))......................... ( -32.40)
>DroSim_CAF1 25987 108 + 1
GUUGCCGGCGGAAGGGAUUUAUGUGUUUAGAUUACUUGAGCCGGCAAGGCCAAUGGAACCGCUUAUAUGUUUAUAUGAUGGCCGCAACAAAACCGUCAUUAAAGUGUA
.((((((((..(((..(((((......)))))..)))..))))))))(((((..(....)..((((((....)))))))))))......................... ( -32.40)
>DroEre_CAF1 21415 108 + 1
GUUGCCGGCGGAAGGGAUUUAUGUGUUUAGAUUACUUGAGCCGGCAAGGCCAAUGGAACCGCUUAUAUGUUUAUAUGAUGGCCGCAACAAACCAGUCAUUAAAGUGUA
.((((((((..(((..(((((......)))))..)))..))))))))(((((..(....)..((((((....)))))))))))......................... ( -32.40)
>DroYak_CAF1 16186 108 + 1
GUUGCCGGCGGAAGGGAUUUAUGUGUUUAGAUUACUUGUGCCGGCAGGGCCAAUGGAACCGCUUAUAUGUUUAUAUGAUGGCCGCAACAAACCAGUCAUUAAAGUGUA
.(((((((((.(((..(((((......)))))..))).)))))))))(((((..(....)..((((((....)))))))))))......................... ( -34.10)
>DroAna_CAF1 290 107 + 1
GUUGCUAACGGAAGGGAUUUAUGGGCUGAGAUUGCUAGAGUCGGCAAGGCCAUUGGAAUCGUUUAUAUGUUUAUAUGUUGGCCGCAAA-AUACCGUCAUUAAAGUGUA
((.(((((((.(((.(((((...((((....(((((......)))))))))....))))).)))...........))))))).))...-................... ( -23.80)
>consensus
GUUGCCGGCGGAAGGGAUUUAUGUGUUUAGAUUACUUGAGCCGGCAAGGCCAAUGGAACCGCUUAUAUGUUUAUAUGAUGGCCGCAACAAAACCGUCAUUAAAGUGUA
.((((((((..(((..(((((......)))))..)))..))))))))(((((..(....)..((((((....)))))))))))......................... (-28.85 = -28.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:19 2006