Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,475,434 – 1,475,553 |
Length | 119 |
Max. P | 0.541836 |
Location | 1,475,434 – 1,475,553 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -43.70 |
Consensus MFE | -29.07 |
Energy contribution | -29.02 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.38 |
Mean z-score | -1.44 |
Structure conservation index | 0.67 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1475434 119 - 27905053 AGACGGGCGGCAUGGUGGGGGCCCGUGUAAUAGUAUACUCAAUAGUGCUGAAUCCCGGAAUCAGCUCCGCUGGUUGGUGCUGCUCGGAAAUGGCAGCAUAUUGAGGGGGAAACUGGAAU ..((((((..(......)..))))))...........(((((((.(((((....((((...((((.(((.....))).)))).))))......)))))))))))).((....))..... ( -40.20) >DroVir_CAF1 9171 119 - 1 ACACGGGCGGCAUUGUCGGCGCCCUGGUAAUGGUGUACUCAAUGGUACUGAAACCAGGUAUCAGUUCCGCUGGCUGAUGCUGCUCCGAUAUGGCUGCAUAUUGUGGAGGAAACUGGAAU .((((((((((((((((((((..((((((.(((((((((....)))))....))))..))))))...))))))).)))))))).))((((((....))))))))).((....))..... ( -49.30) >DroGri_CAF1 9395 119 - 1 AAACGGGCGGCAUCGUCGGUGCUCGGGUAAUGGUGUACUCAAUGGUGCUGAAACCGGGAAUCAGCUCGGCAGGCUGGUGCUGCUCCGAUAUGGCUGCAUAUUGUGGCGGAAACUGUGAU ...(((((((((((.((((..((.(((((......)))))...))..))))..(((((......)))))......)))))))).))).....((..(.....)..))(....)...... ( -44.30) >DroWil_CAF1 8638 119 - 1 ACACCGGUGGCAUUGUUGGAGCCCGGACGAUAGUGUACUCAAUUGUGCUGAAGCCCGGGAUCAGCUCAGCCGGCUGAUGCUGCUCCGAAAUAGCCGCAUAUUGCGGGGGGAACUACAAU ...((((((((....(((((((((((.(..(((..((......))..)))..).)))))..((((((((....)))).))))))))))....)))))......)))((....))..... ( -43.70) >DroMoj_CAF1 10171 119 - 1 AGACAGGCGGCAUUGUGGCCGCCCUGGCGAUGGUGUAUUCGAUGGUACUGAAGCCAGGUAUCAGCUCAGCGGGCUGAUGUUGCUCCGAUAUGGCUGCAUAUUGUGGAGGAAACUGAAAU ...((((((((......)))))((((((......((((......))))....))))))((((((((.....))))))))((.((((((((((....))))))..)))).)).))).... ( -45.20) >DroAna_CAF1 8646 119 - 1 AGACUGGCGGCAUAGUGGGUGCCCUGGUGAUGGUGUACUCUAUGGUGCUGAAUCCUGGAAUUAGCUCCGCAGGCUGGUGCUGCUCCGAUAUGGCGGCAUAUUGAGGGGGGAACUGUAAA ..((..((.((.....((((((((.......)).))))))...((.(((((.((...)).))))).))))..))..)).((.((((((((((....))))))).))).))......... ( -39.50) >consensus AGACGGGCGGCAUUGUGGGCGCCCGGGUAAUGGUGUACUCAAUGGUGCUGAAACCAGGAAUCAGCUCCGCAGGCUGAUGCUGCUCCGAUAUGGCUGCAUAUUGUGGGGGAAACUGGAAU .....((((((...........((((((......((((......))))....)))))).(((((((.....))))))))))))).(((((((....)))))))...((....))..... (-29.07 = -29.02 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:11 2006