Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,677,476 – 10,677,596 |
Length | 120 |
Max. P | 0.818115 |
Location | 10,677,476 – 10,677,596 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -20.90 |
Consensus MFE | -19.25 |
Energy contribution | -19.12 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.74 |
Structure conservation index | 0.92 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10677476 120 + 27905053 UCUUUUACGAGCUAAACACACCCUCUUCACACCUACAAGAUACUUUAGUACGUGCUGAACCACUUAUCUUAAGUAUCUUUAUCACAUAUGGAUGGUUUGUUUAUUUAAAUGAAUAGGUAU (((((((..((.((((((.(((.(((..........(((((((((.((((.(((......))).)).)).)))))))))..........))).))).)))))).))...)))).)))... ( -22.45) >DroSec_CAF1 18834 120 + 1 UCUUUUACGACCUUAACACACCCUCUUCACACCAACAAGAUACUUUAGUACGUGCUGAACCACUUAUCUUAAGUAUCUUUGUCACAUAUGGAUGGUUUAUUUAUUUAAAUGAAUAGGUAU .........(((.......(((.(((........(((((((((((.((((.(((......))).)).)).))))))).)))).......))).))).(((((((....)))))))))).. ( -21.46) >DroSim_CAF1 20888 120 + 1 UCUUUUACGAGCUUAACACACCCUCUUCACACCUACAAGAUACUUUAGUACGUGCUGAACCACUUAUCUUAAGUAUCUUUAUCACAUAUGGAUGGUUUAUUUAUUUAAAUGAAUAGGUAU ........(((...........))).....(((((.(((((((((.((((.(((......))).)).)).))))))))).....(((.(((((((.....))))))).)))..))))).. ( -20.60) >DroEre_CAF1 16039 118 + 1 UCUUUUACGAGCCUAGCACACCCUCUUCACACCUACAAGAUACUUUAGUACGUGCUGAACCACUUAUCUUAAGUAUCUUUAUCACACA--GAUGGUUUAUUUAUUUUAAUGAAUAAGUAU ........(((((.......................(((((((((.((((.(((......))).)).)).))))))))).(((.....--))))))))((((((((....)))))))).. ( -19.10) >consensus UCUUUUACGAGCUUAACACACCCUCUUCACACCUACAAGAUACUUUAGUACGUGCUGAACCACUUAUCUUAAGUAUCUUUAUCACAUAUGGAUGGUUUAUUUAUUUAAAUGAAUAGGUAU .....(((...........(((.(((..........(((((((((.((((.(((......))).)).)).)))))))))..........))).)))((((((((....))))))))))). (-19.25 = -19.12 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:12 2006