Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,677,281 – 10,677,401 |
Length | 120 |
Max. P | 0.834557 |
Location | 10,677,281 – 10,677,401 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.50 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -21.29 |
Energy contribution | -21.93 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.16 |
Mean z-score | -1.97 |
Structure conservation index | 0.76 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10677281 120 + 27905053 UAGGAUAAAGUGCCAUUAGAUUUAAACGAGACUUUAUUUGUAGUGUUAGGUGUUUGGAAUGGGCCUUAAACACCUUUUCGUUGCAUUAAAAAUGUAUUAUUUAAAUCAAAUGGUGUAAAU .........(..(((((.((((((((..(.((......(((((((..((((((((((........))))))))))...)))))))........)).)..)))))))).)))))..).... ( -31.14) >DroSec_CAF1 18634 120 + 1 UAGGAUAAAGUGCCAUUAGAUUUUAACGAGGCUUUAUUUGUAGUGUUAGGUGUUUGAAAUGGGUCUUAAACACCUUUUCGUUCCAUCAGAAAUUUAUUAUUUAAAUCAAAUGGUGUAAAG .........(..(((((.((((((((((..((.......))..)))))(((((((((........)))))))))............................))))).)))))..).... ( -25.40) >DroSim_CAF1 20688 120 + 1 UAGGAUAAAGUGCCAUUAGAUUUUAACGACGCUUUAUUUGUAGUGUUACGUGUUUGAAAUGGGUCUUAAACACCUUUUCAUUCCAUUAGAAAUUUAUUAUUUAAAUCAAAUGGUGUAAAG .........(..(((((.(((((....((((((........))))))..((((((((........)))))))).............................))))).)))))..).... ( -22.60) >DroEre_CAF1 15857 120 + 1 UAAGAUAAAGUGCCAUUGGAUUUUAACGAGUCUUUAUUUGUAGUUUUAGGUGUUUGAAAUGGGUUUUAAACACCUUUUCGUUGCAUAGCUCAUAAAUUAUUGAAAUAAAAUGGCAUAAAG .........((((((((..(((((((..(.........(((((....((((((((((((....)))))))))))).....)))))...........)..)))))))..)))))))).... ( -32.05) >DroYak_CAF1 10737 120 + 1 UAAGAUAAAGUGCCAUUGGAUUUUAACGAGUCUUUGUCUGUAGUGUUUGGUGUUUGAAAUGGGCUUUAAACACCUUUUCGUUGCAUAGCACAUAAAUUAUUUCAGUAUAAUGGCAUCAAG .........((((((((((((((....)))))(((((.(((.((((..((((((((((......))))))))))........)))).))).)))))...........))))))))).... ( -29.30) >consensus UAGGAUAAAGUGCCAUUAGAUUUUAACGAGGCUUUAUUUGUAGUGUUAGGUGUUUGAAAUGGGUCUUAAACACCUUUUCGUUGCAUAACAAAUAUAUUAUUUAAAUCAAAUGGUGUAAAG ..........(((((((.(((((.((..(.........(((((((..((((((((((........))))))))))...)))))))...........)..)).))))).)))))))..... (-21.29 = -21.93 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:11 2006