Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,676,692 – 10,676,840 |
Length | 148 |
Max. P | 0.958880 |
Location | 10,676,692 – 10,676,809 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -35.10 |
Consensus MFE | -28.20 |
Energy contribution | -29.00 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.07 |
Mean z-score | -2.11 |
Structure conservation index | 0.80 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10676692 117 + 27905053 CCCCCCCAAAAGGUGGCCCAAAGUCAGAGUUGAUGGAAAAUCUCCAAUUACCUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCG---CAACUUAUCUGGAAAACUGUCA .....(((..((((.((.........(((.(((((((.....))).)))).)))(((((..((((((((.........))))))))..))))).)---).))))...))).......... ( -37.40) >DroSec_CAF1 18061 116 + 1 CAC-CCCAAAAGGUGGCCCAAAGUCAGAGUUUAUGGAAAAUCUGCAAUUACUUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCC---CAACUUAUCUGGAAAACUGUCA (((-(......))))..(((..(.((((.(((....))).))))).........(((((..((((((((.........))))))))..)))))..---.........))).......... ( -33.30) >DroSim_CAF1 20105 116 + 1 CAC-CCCAAAAGGUGGCCCAAAAUCAGAGUUGAUGGAAAAUCUCCAAUUACUUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCC---CAACUUAUCUGGAAAACUGUCA (((-(......))))........(((((((((.((((.....))))........(((((..((((((((.........))))))))..)))))..---))))...))))).......... ( -37.80) >DroEre_CAF1 15287 114 + 1 C---CCCUAAAGGUGGGCCAAAGUCAGAACUGAUGGAAAAUCUCCAAUUACCUCGUGCGUCGGCCAGGGUUCACAGCUCCAUGGUCAAUGCACCC---CAACUUAUCUGGAAAACUGUCA .---.((..(((.((((.........((..(((((((.....))).))))..))((((((.(((((((((.....)).)).))))).))))))))---)).)))....)).......... ( -31.20) >DroYak_CAF1 10153 117 + 1 C---CCCCAAAGGUGGCCCAAAGUCAGAGUUGAUGGAAAAUCUCCAAUUACCUCGUGCGUCGGCCAGAGUUCACAGCUCCAUGGUCAAUGCACCCAGGCAACUUAUCUGGAAAACUGUCA .---..(((.((((.(((........(((.(((((((.....))).)))).)))((((((.(((((((((.....))))..))))).))))))...))).))))...))).......... ( -35.80) >consensus C_C_CCCAAAAGGUGGCCCAAAGUCAGAGUUGAUGGAAAAUCUCCAAUUACCUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCC___CAACUUAUCUGGAAAACUGUCA ...........((..(.(((......(((.(((((((.....))).)))).)))(((((..((((((((.........))))))))..)))))..............)))....)..)). (-28.20 = -29.00 + 0.80)
Location | 10,676,732 – 10,676,840 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 92.12 |
Mean single sequence MFE | -25.91 |
Consensus MFE | -20.52 |
Energy contribution | -20.48 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -2.14 |
Structure conservation index | 0.79 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10676732 108 + 27905053 UCUCCAAUUACCUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCG---CAACUUAUCUGGAAAACUGUCAAGCUCCUUAUCCACAAUUCCACGGCAUACAC ...((.........(((((..((((((((.........))))))))..)))))..---.........(((((...(((..............))).))))).))....... ( -26.44) >DroSec_CAF1 18100 108 + 1 UCUGCAAUUACUUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCC---CAACUUAUCUGGAAAACUGUCAAGCUCCAAAUCCCCAAUUCCACGGCAUACAC ..(((.........(((((..((((((((.........))))))))..)))))..---.........((((...((....)).))))................)))..... ( -28.50) >DroSim_CAF1 20144 108 + 1 UCUCCAAUUACUUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCC---CAACUUAUCUGGAAAACUGUCAAGCUCCAAAUCCCCAAUUCCACGGCAUACAC ...((.........(((((..((((((((.........))))))))..)))))..---.........((((...((....)).))))...............))....... ( -26.90) >DroEre_CAF1 15324 108 + 1 UCUCCAAUUACCUCGUGCGUCGGCCAGGGUUCACAGCUCCAUGGUCAAUGCACCC---CAACUUAUCUGGAAAACUGUCAAGCUCCUUAUCCCCAAUCCCAUGGCAUACAC ..((((..((....((((((.(((((((((.....)).)).))))).))))))..---.....))..))))....(((((.....................)))))..... ( -22.00) >DroYak_CAF1 10190 111 + 1 UCUCCAAUUACCUCGUGCGUCGGCCAGAGUUCACAGCUCCAUGGUCAAUGCACCCAGGCAACUUAUCUGGAAAACUGUCAAGCUUCUUAUCCCCAAUCCGCCGGCAUACAC ..((((........((((((.(((((((((.....))))..))))).))))))..((....))....))))....((((..((................)).))))..... ( -25.69) >consensus UCUCCAAUUACCUCGUGCAGCGGCCAGGGUUCACAGCUCCCUGGUCAAUGCACCC___CAACUUAUCUGGAAAACUGUCAAGCUCCUUAUCCCCAAUUCCACGGCAUACAC ..........((..(((((..((((((((.........))))))))..)))))...............(((...((....)).)))................))....... (-20.52 = -20.48 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:10 2006