Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,675,486 – 10,675,597 |
Length | 111 |
Max. P | 0.581401 |
Location | 10,675,486 – 10,675,597 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 87.24 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -20.98 |
Energy contribution | -21.58 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.16 |
Mean z-score | -1.43 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10675486 111 + 27905053 UUCAUUGAAACUCUUAAAGUUUUCAAUUGCAUUUCCGUUGACCGCCUUCGAUGUGGGAAUUCUUUUAGAAACAAA--AAACUUACAGUGGCGGUCAGAAAAAUGUUACUUUAA ...(((((((((.....)).))))))).((((((...(((((((((.....((((((..................--...))))))..)))))))))..))))))........ ( -26.80) >DroSec_CAF1 16845 112 + 1 UUCAAUGAAACUUUCAAAGUUUUCAAUUGCAUUUCCGUUGACCGCCUUCGAUGUGGGAAUUCACUUAGAAGCAAAA-AAACUUACAGUGGCGGUCAGAAAAAUGUCACUCUGA .....(((((((.....)).)))))...((((((...(((((((((.....((((((..(((.....)))......-...))))))..)))))))))..))))))........ ( -25.80) >DroSim_CAF1 18892 113 + 1 UUCAUUGAAACUUUCAAAGUUUUCAAUUGCAUUUCCGUUGACCGCCUUCAAUGUGGGAAUUCUCUUAGAAGCAAAAAAAACAUACAGUGGCGGUCAGAAAAAUGUCACUUUGA .............(((((((........((((((...(((((((((....((((.....(((.....))).........)))).....)))))))))..)))))).))))))) ( -25.94) >DroEre_CAF1 14078 111 + 1 CUCAUUGAAACUUAAAAAGUUUUCCAUUGCAUUUCCGUUGACCGCCUUCGAAGUGGGAAUACUUUAAGAAGCAAA--AAACUCACAGUUGUGGUCAGAAAAGUGGCGCAUUAA ......((((((.....))))))......(((((...((((((((((((((((((....))))))..))))....--.(((.....)))))))))))..)))))......... ( -21.80) >DroYak_CAF1 8928 110 + 1 UUCAUUGAAACUUUACAAGUUUUCAAUUGCAUUUCCGUUGACCGCCUUCGAUGUGGAAAUACUUUCAGAGGCAAA---AUCUUACAGUUGCGGUCAGAAAAAUGUCACAUUAA ...(((((((((.....)).))))))).((((((...((((((((((..((.(((....)))..))..))))..(---((......)))..))))))..))))))........ ( -23.80) >consensus UUCAUUGAAACUUUAAAAGUUUUCAAUUGCAUUUCCGUUGACCGCCUUCGAUGUGGGAAUUCUUUUAGAAGCAAA__AAACUUACAGUGGCGGUCAGAAAAAUGUCACUUUAA ...(((((((((.....)).)))))))(((((((...(((((((((.....((((((.......................))))))..)))))))))..))))).))...... (-20.98 = -21.58 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:05 2006