Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,674,345 – 10,674,453 |
Length | 108 |
Max. P | 0.971854 |
Location | 10,674,345 – 10,674,453 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 93.59 |
Mean single sequence MFE | -30.66 |
Consensus MFE | -27.14 |
Energy contribution | -27.18 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.69 |
Structure conservation index | 0.89 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10674345 108 + 27905053 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAU--------A--UAUGCGAUCCAUUAUUAUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.(((((((((...--------.--..)))...((((....)))).......)))))).)..))))))..))))))).. ( -28.20) >DroSec_CAF1 15726 108 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUUGCUGCCGUAAAU--------A--UAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.((((((((.(((..--------.--..((((((.....))))))....))).))))))))..))))))..))))))).. ( -31.30) >DroSim_CAF1 17307 110 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAU--------AUAUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.((((((.(((..--------.....((((((.....))))))....))).)))))).)..))))))..))))))).. ( -28.40) >DroEre_CAF1 13085 118 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAUGCACACAUAAAUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.((((((.(((..((.((((...................))))))..))).)))))).)..))))))..))))))).. ( -32.71) >DroYak_CAF1 7810 118 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAUGCACACAUAAAUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.((((((.(((..((.((((...................))))))..))).)))))).)..))))))..))))))).. ( -32.71) >consensus UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAU________A_AUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((.(((((.((.((((((....))))))...(((....)))))))))).............(((((((..((..(((((.((((...)))).))))).)).))))))).)))).. (-27.14 = -27.18 + 0.04)
Location | 10,674,345 – 10,674,453 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 93.59 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -21.01 |
Energy contribution | -21.21 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.85 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10674345 108 - 27905053 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCAUAAUAAUGGAUCGCAUA--U--------AUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............(((((((....).((((....))))........--.--------......))))))...(((...((((.......))))...))).))...)))). ( -20.80) >DroSec_CAF1 15726 108 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUA--U--------AUUUACGGCAGCAAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............((((((....(..(((......)))..)(((..--.--------...)))))))))...(((...((((.......))))...))).))...)))). ( -24.20) >DroSim_CAF1 17307 110 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAUAU--------AUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............((((((....(..(((......)))..)(((.....--------...)))))))))...(((...((((.......))))...))).))...)))). ( -23.10) >DroEre_CAF1 13085 118 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAUUUAUGUGUGCAUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ((((..((((((............((((...)))).......((((((.....)))))))))))).....(((((.....)))))......))))..((.(((((....))))).)). ( -27.50) >DroYak_CAF1 7810 118 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAUUUAUGUGUGCAUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ((((..((((((............((((...)))).......((((((.....)))))))))))).....(((((.....)))))......))))..((.(((((....))))).)). ( -27.50) >consensus AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAU_U________AUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............((((((....(..(((......)))..)(((................)))))))))...(((...((((.......))))...))).))...)))). (-21.01 = -21.21 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:59 2006