Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,471,873 – 1,471,968 |
Length | 95 |
Max. P | 0.944702 |
Location | 1,471,873 – 1,471,968 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -19.91 |
Consensus MFE | -14.26 |
Energy contribution | -14.26 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.72 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1471873 95 - 27905053 -----CGGCUGUAGGUAGACUACAGUAGUAGUCUGUCUACCUCUGA-----AAAGCUGCCACACAUACCCAUGCCCAACCCAACCCCAAAC-CCACUGACACUGCU -----.(((.((((..(((((((....)))))))..))))..((..-----..))..)))...............................-.............. ( -22.00) >DroSec_CAF1 5714 81 - 1 -----CGGCUGUAGGUAGACU---------GGCUGUCUACCUCUGA-----AAAGCUGCCACACAUACCCAUAC-----CCAACCCCAAAC-CCACUGACACUGCU -----.(((.((((((((((.---------....))))))))....-----...)).)))..............-----............-.............. ( -17.21) >DroSim_CAF1 5931 81 - 1 -----CGGCUGUAGGUAGACU---------GGCUGUCUACCUCUGA-----AAAGCUGCCACACAUACCCAUAC-----CCAACCCCAAAC-CCACUGACACUGCU -----.(((.((((((((((.---------....))))))))....-----...)).)))..............-----............-.............. ( -17.21) >DroEre_CAF1 6646 75 - 1 -----CGGCUGUAGGUAGACU---------GGCUGUCUACCUCUGA-----AAAGCUGCCACACAUACCCAACCC-----------CAAAC-CCACUGACACUGCU -----.(((.((((((((((.---------....))))))))....-----...)).)))...............-----------.....-.............. ( -17.21) >DroAna_CAF1 5010 91 - 1 GGUCUCGGCUGUAGGUAGACU---------UGCUGUCUACCUCUGGCUGCUAAAGCUGGCCCACACACAUACACA-----CAUAGCUACGCUCUACUG-UACUGCU ((((..((((..((((((((.---------....))))))))..))))((....)).))))..............-----...(((...((......)-)...))) ( -25.90) >consensus _____CGGCUGUAGGUAGACU_________GGCUGUCUACCUCUGA_____AAAGCUGCCACACAUACCCAUAC_____CCAACCCCAAAC_CCACUGACACUGCU .....(((((..((((((((..............))))))))...........)))))................................................ (-14.26 = -14.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:10 2006