Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,673,549 – 10,673,658 |
Length | 109 |
Max. P | 0.869414 |
Location | 10,673,549 – 10,673,658 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 93.39 |
Mean single sequence MFE | -34.66 |
Consensus MFE | -32.16 |
Energy contribution | -32.20 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.09 |
Mean z-score | -1.31 |
Structure conservation index | 0.93 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10673549 109 - 27905053 AUUUUCUCUCAAUGUUCCCCCUUUCUGGGUUGGCUUGAAAAUGGGGCCCCCAGAUGAUUGUUGUGGCAUGAAUACGUUGGAGGAAAGGUUCUUCGAUUCGAGUGACCAA .(((((((.((((((........((((((..(((((.......)))))))))))....(((....))).....)))))))))))))((((.((((...)))).)))).. ( -33.40) >DroSec_CAF1 14908 109 - 1 AUUUUCUCUCAAUGUUCCCCUUUUCUGGGUUGGCCUGAAAACGGGGCCUCCAGAUGAUUGUUGUGGCAUGAAUCCGUUGGAGGAAAGGUUCUUCGAUUCAAGUGACCAA .(((((((.(((((..(((.(((((.(((....)))))))).)))(((....(((....)))..))).......))))))))))))(((((((......))).)))).. ( -31.30) >DroSim_CAF1 16494 109 - 1 AUUUUCUCUCAAUGUUCCCCUUUGCUGGGUUGGCCUGAAAACGGGGCCUCCAGAUGAUUGUUGUGGCAUGAAUCCGUUGGAGGAAAGGUUCCUCGAUUCGAGUGACCAA .(((((((.(((((...(((......)))..(((((.......)))))....(((...(((....)))...)))))))))))))))(((..((((...))))..))).. ( -34.70) >DroEre_CAF1 12258 108 - 1 AUUUUCUCUCAAUGUUCCCCU-UUCUGGUUUGGCCUGAAGAAGGGGCCCCCAGAUGAUUGUUGUGGCACGAAUCCGUUGGAGGAAAGGUUCCUCGCUUCGAGUGACCAA .(((((((.(((((.......-.(((((...(((((.......))))).))))).((((((......)).))))))))))))))))(((..((((...))))..))).. ( -35.20) >DroYak_CAF1 6982 108 - 1 AUUUUCUCUCAAUGUUCCCCU-UUCUGGGCUGGCCUGAAAAUGGGGCCCCCAGAUGCUUGUUGUGGCACGAAUCCGUUGGAGGAAAGGUUCUUCGAUUCGAGUGACCAA .(((((((.((((((((....-.((((((..(((((.......)))))))))))((((......)))).)))..))))))))))))((((.((((...)))).)))).. ( -38.70) >consensus AUUUUCUCUCAAUGUUCCCCUUUUCUGGGUUGGCCUGAAAACGGGGCCCCCAGAUGAUUGUUGUGGCAUGAAUCCGUUGGAGGAAAGGUUCUUCGAUUCGAGUGACCAA .(((((((.(((((.........((((((..(((((.......)))))))))))....(((....)))......))))))))))))(((..((((...))))..))).. (-32.16 = -32.20 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:56 2006