Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,671,254 – 10,671,454 |
Length | 200 |
Max. P | 0.893813 |
Location | 10,671,254 – 10,671,374 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -44.72 |
Consensus MFE | -38.90 |
Energy contribution | -39.82 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.11 |
Mean z-score | -1.17 |
Structure conservation index | 0.87 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10671254 120 + 27905053 GGCUCGCCAGCAGGUGGAGGCCAGUAGAUGCCUUCAACUUCAUCGCAAUGUGGAAAAUUUGAGGGAUCUCGAGAUGGAAGUGGCCCGUGCCCACACAGCGUUGGCUGUCAAGAACAAGAU (((..((((((((((((((((........)))))).))))....((..(((((....((((((....))))))((((.......))))..)))))..)))))))).)))........... ( -39.60) >DroSec_CAF1 12688 120 + 1 GGCUCGCCAGCAGGUGGAGGCCAGCAGAUGCCUGCAACUCCAUCGCAAUGUGGAAAAUUUGAGGGAUCUCGAGAUGGAGGUGGCCCGGGCCCACACAGCCUUGGCUGUCAAGAACAAGAU (((((((((.....))).(((((((((....))))..(((((((......(....)..(((((....)))))))))))).)))))))))))...(((((....)))))............ ( -45.90) >DroSim_CAF1 14234 120 + 1 GGCUCGCCAGCAGGUGGAGGCCAGCAGAUGCCUGCAACUCCAUCGCAAUGUGGAAAAUUUGAGGGAUCUGGAGAUGGAGGUGGCCCGGGCCCACACAGCCUUGGCUGUCAAGAACAAGAU ((((((((....))))..))))..(((((.(((.(((.(((((......)))))....)))))).)))))........((..(((.((((.......)))).)))..))........... ( -42.60) >DroEre_CAF1 9955 120 + 1 GGCCCGCCAGCAGGUGGAGGCCAGCAGAUGCCUGCAACUCCAUCGCAAUGUGGAGAAUCUGAGGGAUCUCGAGAUGGAGGUGGCCCGGGCUCACACUGCCUUGGCAGUUAAGUACAAGAU (((((((((.....))).(((((((((....))))..(((((((.(.....)((((.((....)).))))..))))))).)))))))))))...(((((....)))))............ ( -47.70) >DroYak_CAF1 4614 120 + 1 GGCCCGCCAGCAGGUGGAGGCCAGCAGGUGCCUGCAACUCCAUCGCAAUGUGGAGAAUCUGAGGGAUCUCGAGAUGGAGGUGGCCCGGGCACACACUGCCUUGGCUGUUAAGAACAAGAU ((((((((....))))..)))).((((....))))..(((((((.(.....)((((.((....)).))))..)))))))(..(((.(((((.....))))).)))..)............ ( -47.80) >consensus GGCUCGCCAGCAGGUGGAGGCCAGCAGAUGCCUGCAACUCCAUCGCAAUGUGGAAAAUUUGAGGGAUCUCGAGAUGGAGGUGGCCCGGGCCCACACAGCCUUGGCUGUCAAGAACAAGAU (((((((((.....))).(((((((((....))))..(((((((.(.....)......(((((....)))))))))))).)))))))))))...(((((....)))))............ (-38.90 = -39.82 + 0.92)
Location | 10,671,334 – 10,671,454 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.33 |
Mean single sequence MFE | -39.93 |
Consensus MFE | -32.98 |
Energy contribution | -33.54 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.70 |
Structure conservation index | 0.83 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10671334 120 - 27905053 UUUCCACGGCUCGCUGUUCCGCCAAAGCUUCGGCCCGCUCCCGCUGCUUAUCUUCCACCGUUUGUUUGAUAUUGUUGGUGAUCUUGUUCUUGACAGCCAACGCUGUGUGGGCACGGGCCA .......(((..........)))........((((((..(((((.((.((((...((.....))...))))..((((((..((........))..))))))))...)))))..)))))). ( -40.30) >DroSec_CAF1 12768 120 - 1 UUUCCACGGCUCGCUGCUCCGCCAAAGCCUCGGCCCGCUCCCGCUGCUUAUCUUCCACCGUCUGUUUGAUAUUAUUGGUGAUCUUGUUCUUGACAGCCAAGGCUGUGUGGGCCCGGGCCA .......((((.((......))...))))..((((((..(((((...........(((((...((.....))...)))))............(((((....))))))))))..)))))). ( -42.80) >DroSim_CAF1 14314 120 - 1 UUUCCACGGCUCGCUGCUCCGCCAAAGCUUCGGCCCGCUCCCGCUGCUUAUCUUCCACCGUCUGUUUGAUAUUGUUGAUGAUCUUGUUCUUGACAGCCAAGGCUGUGUGGGCCCGGGCCA .......(((..........)))........((((((..(((((...(((((...((..(((.....)))..))..)))))...........(((((....))))))))))..)))))). ( -39.30) >DroEre_CAF1 10035 120 - 1 UUUCCACGGCUCUCUGCUUCGCCAAAGCCUCGGCCCGCUCCCGCUGCUUAUCUUCCACCGUCUGCUUGAUAUUUUGGCUGAUCUUGUACUUAACUGCCAAGGCAGUGUGAGCCCGGGCCA .......((((....((...))...))))..(((((((((.((((((((..........(((.....)))....((((.................)))))))))))).))))..))))). ( -39.53) >DroYak_CAF1 4694 120 - 1 UUUCCACGGCUCGCUGCUCCGCCAAAGCCUCGGCCCGCUCCCGCUGCUUAUCCUCCACCGUCUGCUUGAUAUUAAGGGUGAUCUUGUUCUUAACAGCCAAGGCAGUGUGUGCCCGGGCCA .......((((.((......))...))))..((((((..(((((((((((((((.....(((.....)))....))))))).((((...........)))))))))).).)..)))))). ( -37.70) >consensus UUUCCACGGCUCGCUGCUCCGCCAAAGCCUCGGCCCGCUCCCGCUGCUUAUCUUCCACCGUCUGUUUGAUAUUAUUGGUGAUCUUGUUCUUGACAGCCAAGGCUGUGUGGGCCCGGGCCA .......((((.((......))...))))..((((((..(((((...........(((((((.....)))......))))............(((((....))))))))))..)))))). (-32.98 = -33.54 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:49 2006